catmaid / CATMAIDLinks
Collaborative Annotation Toolkit for Massive Amounts of Image Data
☆196Updated last month
Alternatives and similar repositories for CATMAID
Users that are interested in CATMAID are comparing it to the libraries listed below
Sorting:
- ImJoy: Deep Learning Made Easy!☆190Updated last year
- Read and write Neuroglancer datasets programmatically.☆156Updated 2 weeks ago
- Visualize, share and annotate your large 3D images online☆153Updated last week
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…☆76Updated 2 weeks ago
- OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological …☆211Updated last week
- ilastik-shell, applets, and workflows to string them together.☆380Updated 2 weeks ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆27Updated 6 years ago
- Block-wise task scheduling for large nD volumes.☆32Updated 4 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆50Updated 2 weeks ago
- ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. …☆46Updated 5 months ago
- www.vaa3d.org☆79Updated 7 years ago
- website for the napari image viewer☆44Updated this week
- A library to facilitate machine learning on multi-dimensional images.☆85Updated this week
- Render transformed image tiles☆34Updated last week
- Connecting Java/ImgLib2 + Python/NumPy☆30Updated 2 weeks ago
- A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images☆86Updated last year
- PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…☆18Updated 5 years ago
- GPU accelerated image/volume processing in Python☆111Updated 3 months ago
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆12Updated 3 years ago
- Scalable Optical Flow-based Image Montaging and Alignment☆80Updated 3 weeks ago
- Create 3D/4D animations using a natural language-based syntax☆60Updated 2 months ago
- Python module to analyse skeleton (thin object) images☆128Updated 3 weeks ago
- Software package for neuron reconstruction and visualization☆39Updated 2 months ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆24Updated last week
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆59Updated 4 years ago
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆34Updated 4 months ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago
- CLIJ is deprecated. Visit CLIJ2☆56Updated 4 years ago
- The RPC library used in ImJoy.☆24Updated last year
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Updated 6 years ago