catmaid / CATMAIDLinks
Collaborative Annotation Toolkit for Massive Amounts of Image Data
☆196Updated last week
Alternatives and similar repositories for CATMAID
Users that are interested in CATMAID are comparing it to the libraries listed below
Sorting:
- Visualize, share and annotate your large 3D images online☆157Updated this week
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…☆77Updated this week
- ImJoy: Deep Learning Made Easy!☆189Updated 2 years ago
- Read and write Neuroglancer datasets programmatically.☆160Updated this week
- ilastik-shell, applets, and workflows to string them together.☆384Updated last week
- OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological …☆214Updated last month
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆27Updated 7 years ago
- www.vaa3d.org☆80Updated 7 years ago
- Block-wise task scheduling for large nD volumes.☆32Updated 7 months ago
- website for the napari image viewer☆46Updated this week
- Connecting Java/ImgLib2 + Python/NumPy☆30Updated 3 months ago
- Create 3D/4D animations using a natural language-based syntax☆60Updated 4 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆55Updated last week
- A library to facilitate machine learning on multi-dimensional images.☆86Updated 3 weeks ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago
- ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. …☆46Updated 8 months ago
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆12Updated 4 years ago
- A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images☆89Updated last year
- CLIJ is deprecated. Visit CLIJ2☆56Updated 4 years ago
- PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…☆18Updated 5 years ago
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Updated 6 months ago
- GPU accelerated image/volume processing in Python☆112Updated 6 months ago
- Render transformed image tiles☆34Updated last week
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆59Updated 4 years ago
- Scalable Optical Flow-based Image Montaging and Alignment☆81Updated this week
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- A Python tiff library☆138Updated 3 weeks ago
- Not HDF5☆188Updated this week
- sciview is a tool for visualization and interaction with ND image and mesh data☆72Updated last week
- The RPC library used in ImJoy.☆25Updated last year