PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation of 3D electron microscopy stacks of brain tissue. https://www.ariadne.ai
☆18May 18, 2020Updated 6 years ago
Alternatives and similar repositories for PyKNOSSOS
Users that are interested in PyKNOSSOS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…☆76Updated this week
- Legacy project superseded by https://github.com/morphonets/SNT☆13Jul 19, 2021Updated 5 years ago
- InVivoTools a set of neurophysiology tools, forked from VanHooserTools, containing tools for visual stimulation and analysis of calcium i…☆14Jun 2, 2026Updated 2 months ago
- Instrument Control for Microscopes and Accessories☆12Jan 31, 2019Updated 7 years ago
- Code and performance tests to demonstrate the COUNTLESS algorithm. https://medium.com/@willsilversmith/countless-high-performance-2x-down…☆10Oct 23, 2019Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- UltraZed Edition examples☆12Oct 29, 2017Updated 8 years ago
- ☆11May 6, 2024Updated 2 years ago
- Conversion of neuroimaging data for display in Neuroglancer☆31Jul 13, 2026Updated 3 weeks ago
- Commonly used 3rd party source code for Matlab - sometimes with some minor fixes☆11Jul 30, 2013Updated 13 years ago
- Motion Tracking☆13Jan 12, 2023Updated 3 years ago
- MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data☆13Jul 15, 2020Updated 6 years ago
- Now maintained at https://github.com/ScrollPrize/villa/blob/main/scrollprize.org/docs/20_community_projects.md (this repository archived)☆12Nov 21, 2024Updated last year
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Apr 21, 2026Updated 3 months ago
- scoutfs userspace utilities☆11Dec 7, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Feb 8, 2023Updated 3 years ago
- Basic integration for Slack notifications for Matlab.☆21Nov 20, 2014Updated 11 years ago
- Plugins collated for the Fiji Cookbook☆27Jun 14, 2022Updated 4 years ago
- A unified framework for skeletonization, morphological analysis, and connectivity analysis.☆43Aug 23, 2024Updated last year
- Command line tool for registration of very large 3D volumes.☆16Jan 28, 2026Updated 6 months ago
- 🔍 Track user interactions with Mixpanel in Shiny apps or R scripts☆13Aug 19, 2025Updated 11 months ago
- Software package for neuron reconstruction and visualization☆40May 27, 2025Updated last year
- Resources for users and developers of Dicoogle☆20Apr 22, 2025Updated last year
- lodepng-turbo is a fast PNG image codec that uses SIMD instructions (MMX, SSE2, AVX2, NEON) to accelerate baseline PNG decompression on x…☆20Jan 22, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SIMD sorting network generator and very basic tester☆16Apr 2, 2022Updated 4 years ago
- Open-source laser beam profiling software designed for cheap webcams☆26Jul 18, 2016Updated 10 years ago
- Information regarding the WeyTec MK06☆15May 11, 2019Updated 7 years ago
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated last year
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆26Jul 14, 2026Updated 3 weeks ago
- An end-to-end data management system for MRI☆19Sep 20, 2018Updated 7 years ago
- Collaborative Approach for eNhanced Denoising under Low-light Excitation☆20Jun 5, 2025Updated last year
- ☆21Jan 28, 2012Updated 14 years ago
- Arduino-based micro-controller firmware for LED array microscope illuminators☆26Aug 5, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Interrupt based quadrature encoder for RP2040 / Raspberry Pi Pico☆16Nov 11, 2024Updated last year
- Prostate gland segmentation with deep Convolutional Neural Networks☆10May 29, 2017Updated 9 years ago
- ☆12Sep 29, 2015Updated 10 years ago
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆40Jul 2, 2026Updated last month
- T2N is an extension of the TREES toolbox providing an interface between Matlab and the compartmental modeling environment NEURON. It w…☆10Sep 3, 2019Updated 6 years ago
- ImgLib2-based viewer for registered SPIM stacks and more☆44Jul 23, 2026Updated 2 weeks ago
- Mesh generation, skeletonization, voxelization of sparse 3D data.☆26Updated this week