Alternatives and similar repositories for PyKNOSSOS:

Users that are interested in PyKNOSSOS are comparing it to the libraries listed below

• ClearVolume / PyClearVolume
  python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.
  ☆15Updated 8 years ago
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆58Updated last year
• clij / clij-docs
  Online documentation and reference for CLIJ
  ☆28Updated 3 years ago
• funkey / nyroglancer
  jupyter notebook extension to visualize numpy arrays with the neuroglancer
  ☆28Updated 6 years ago
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆35Updated 5 months ago
• PreibischLab / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆69Updated last week
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆46Updated this week
• knossos-project / knossos
  KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…
  ☆74Updated 3 months ago
• billkarsh / Alignment_Projects
  Aligner for large scale serial section image data
  ☆15Updated last year
• saalfeldlab / render
  Render transformed image tiles
  ☆34Updated this week
• Jhsmit / PymageJ
  Python tools for ImageJ
  ☆13Updated 3 years ago
• PreibischLab / multiview-reconstruction
  Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
  ☆24Updated last week
• BrancoLab / imgreg2D
  2D image registration in python, using napari.
  ☆16Updated 3 years ago
• royerlab / daxi
  High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy
  ☆27Updated 5 months ago
• CSBDeep / CSBDeep_website
  ☆40Updated 4 years ago
• janelia-flyem / NeuTu
  Software package for neuron reconstruction and visualization
  ☆38Updated 10 months ago
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆61Updated 2 weeks ago
• clEsperanto / i2k2020_tutorial_clij_clesperanto
  ☆12Updated 4 years ago
• napari / napari.github.io
  website for the napari image viewer
  ☆44Updated this week
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆54Updated 3 weeks ago
• Vaa3D / Vaa3D_Wiki
  www.vaa3d.org
  ☆79Updated 6 years ago
• Vaa3D / release
  Binary releases of Vaa3D and related software components
  ☆43Updated last year
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆36Updated 7 months ago
• clij / clij
  CLIJ is deprecated. Visit CLIJ2
  ☆56Updated 3 years ago
• SainsburyWellcomeCentre / lasagna
  3-D imaging visualisation through slicing
  ☆29Updated last month
• samuroi / SamuROI
  SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.
  ☆17Updated 5 years ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆81Updated 2 months ago
• imglib / imglyb
  Connecting Java/ImgLib2 + Python/NumPy
  ☆30Updated 3 weeks ago
• constantinpape / pybdv
  python tools for BigDataViewer
  ☆21Updated last month
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 3 years ago