adwanner / PyKNOSSOS
PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation of 3D electron microscopy stacks of brain tissue. https://www.ariadne.ai
☆18Updated 4 years ago
Alternatives and similar repositories for PyKNOSSOS:
Users that are interested in PyKNOSSOS are comparing it to the libraries listed below
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆27Updated 6 years ago
- Create 3D/4D animations using a natural language-based syntax☆59Updated 2 years ago
- ☆40Updated 5 years ago
- Aligner for large scale serial section image data☆15Updated last year
- website for the napari image viewer☆44Updated this week
- Render transformed image tiles☆34Updated this week
- 3-D imaging visualisation through slicing☆29Updated 3 months ago
- GPU Deconvolution Library with C and Matlab API for nVidia GPUs☆21Updated 6 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 8 months ago
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Updated 8 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆64Updated 2 weeks ago
- www.vaa3d.org☆78Updated 7 years ago
- High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy☆27Updated 7 months ago
- A library to facilitate machine learning on multi-dimensional images.☆82Updated 2 weeks ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆41Updated 2 weeks ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆16Updated last year
- Lattice light-sheet post-processing utility.☆28Updated 2 weeks ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆47Updated last month
- ImgLib2/BDV implementation of Stitching for large datasets☆73Updated 2 weeks ago
- Python library to interface with CATMAID servers. Fully interoperable with navis.☆24Updated last month
- Online documentation and reference for CLIJ☆28Updated 3 years ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆35Updated last year
- GPU accelerated volume rendering / processing in Python☆118Updated 6 years ago
- Things we use regularly☆29Updated 7 months ago
- Python module for registering and fusing multi-view microscopy data☆23Updated last month
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Updated 6 years ago
- Conversion of neuroimaging data for display in Neuroglancer☆27Updated 4 months ago
- GPU accelerated 3D image deconvolution using CUDA☆35Updated 9 months ago
- Block-wise task scheduling for large nD volumes.☆30Updated 3 weeks ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago