navis-org / pymaid

Related projects ⓘ

Alternatives and complementary repositories for pymaid

• navis-org / fafbseg-py
  Tools to work with the FlyWire connectome. Fully interoperable with navis.
  ☆13Updated 3 months ago
• CAVEconnectome / nglui
  ☆10Updated this week
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆27Updated 3 weeks ago
• napari / napari.github.io
  website for the napari image viewer
  ☆44Updated this week
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆23Updated this week
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆40Updated 4 months ago
• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆19Updated 6 months ago
• CAVEconnectome / CAVEclient
  This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
  ☆24Updated this week
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆28Updated 2 weeks ago
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆23Updated 10 months ago
• BlueBrain / Long-range-micro-connectome
  BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome
  ☆10Updated 2 years ago
• CAVEconnectome / MeshParty
  ☆34Updated last week
• natverse / natverse
  Umbrella package to help install/load nat packages
  ☆10Updated 3 years ago
• JaneliaMLCourse / JaneliaMLCourse
  ☆19Updated 6 years ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆78Updated 2 months ago
• constantinpape / pybdv
  python tools for BigDataViewer
  ☆21Updated last year
• saalfeldlab / stitching-spark
  Reconstruct big images from overlapping tiled images on a Spark cluster.
  ☆34Updated last year
• jhuapl-boss / intern
  Python SDK for interacting with the BossDB REST API
  ☆21Updated 3 weeks ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated last year
• abcucberkeley / PetaKit5D
  ☆29Updated this week
• berenslab / MorphoPy
  ☆36Updated 4 months ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 3 years ago
• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 3 years ago
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆58Updated last year
• imglib / imglyb
  Connecting Java/ImgLib2 + Python/NumPy
  ☆30Updated last month
• cuntzlab / treestoolbox
  TREES toolbox
  ☆27Updated 2 months ago
• janclemenslab / napari-video
  Napari plugin for working with video files.
  ☆13Updated last month
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆48Updated last week
• dougollerenshaw / figrid
  Utilities for formatting matplotlib figures
  ☆27Updated 2 years ago