Alternatives and similar repositories for pymaid:

Users that are interested in pymaid are comparing it to the libraries listed below

• navis-org / fafbseg-py
  Tools to work with the FlyWire connectome. Fully interoperable with navis.
  ☆13Updated 5 months ago
• CAVEconnectome / nglui
  ☆10Updated last month
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆28Updated 2 months ago
• napari / napari.github.io
  website for the napari image viewer
  ☆44Updated this week
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆30Updated this week
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆81Updated last month
• jhuapl-boss / intern
  Python SDK for interacting with the BossDB REST API
  ☆21Updated 2 months ago
• CAVEconnectome / MeshParty
  ☆35Updated 2 months ago
• CAVEconnectome / CAVEclient
  This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
  ☆25Updated 3 weeks ago
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆23Updated 2 weeks ago
• BlueBrain / Long-range-micro-connectome
  BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome
  ☆10Updated 2 years ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆45Updated this week
• dougollerenshaw / figrid
  Utilities for formatting matplotlib figures
  ☆27Updated 3 years ago
• berenslab / MorphoPy
  ☆37Updated 5 months ago
• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆21Updated 8 months ago
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆23Updated last year
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆49Updated 3 weeks ago
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆40Updated 6 months ago
• janclemenslab / napari-video
  Napari plugin for working with video files.
  ☆13Updated 3 months ago
• JaneliaMLCourse / JaneliaMLCourse
  ☆19Updated 6 years ago
• brainglobe / brainreg-napari
  Automated 3D brain registration in napari with support for multiple species and atlases.
  ☆15Updated last year
• funkey / nyroglancer
  jupyter notebook extension to visualize numpy arrays with the neuroglancer
  ☆27Updated 6 years ago
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆23Updated this week
• neurodata / CloudReg
  CloudReg
  ☆11Updated 9 months ago
• saalfeldlab / stitching-spark
  Reconstruct big images from overlapping tiled images on a Spark cluster.
  ☆35Updated last year
• constantinpape / pybdv
  python tools for BigDataViewer
  ☆21Updated 3 weeks ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated last year
• nitinagarwal / Mouse_Brain_Registration
  Geometry Processing of Conventionally Produced Mouse Brain Slice Images
  ☆7Updated 5 years ago
• brainglobe / imio
  Loading and saving of image data.
  ☆10Updated 11 months ago