navis-org / pymaidLinks
Python library to interface with CATMAID servers. Fully interoperable with navis.
☆23Updated 10 months ago
Alternatives and similar repositories for pymaid
Users that are interested in pymaid are comparing it to the libraries listed below
Sorting:
- ☆13Updated 3 months ago
- Block-wise task scheduling for large nD volumes.☆33Updated 10 months ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27Updated this week
- A library to facilitate machine learning on multi-dimensional images.☆87Updated last week
- website for the napari image viewer☆47Updated this week
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆19Updated 2 weeks ago
- WebGL-based viewer for volumetric data☆24Updated this week
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 5 years ago
- Python module for registering and fusing multi-view microscopy data☆24Updated 11 months ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆28Updated 7 years ago
- Segmentation of anatomical structures in a common coordinate space☆35Updated last week
- 3-D imaging visualisation through slicing☆31Updated last year
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Updated 6 months ago
- Connecting Java/ImgLib2 + Python/NumPy☆31Updated this week
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- Read and write Neuroglancer datasets programmatically.☆171Updated last week
- Registration to BrainGlobe atlases in napari using Elastix☆29Updated last week
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆18Updated 2 months ago
- A Python package for feature extraction of neural morphologies☆46Updated 3 months ago
- GPU-based 3D non-rigid volumetric registration☆43Updated 5 months ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 4 years ago
- ☆20Updated 7 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆65Updated 3 weeks ago
- BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome☆10Updated 3 years ago
- Utilities for formatting matplotlib figures☆31Updated 11 months ago
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆35Updated 2 months ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Updated 4 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- Loading and saving of image data.☆10Updated 2 years ago