Compression-focused fork of sylph, a fast species-level metagenomic profiler
☆13Oct 15, 2026Updated 3 weeks ago
Alternatives and similar repositories for weebill
Users that are interested in weebill are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline for bioinformatics analysis of bacterial genomes☆33Oct 5, 2026Updated last month
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆39Aug 28, 2026Updated 2 months ago
- A high-performance in-silico PCR tool for primer matching and product extraction from FASTA and GenBank sequences.☆20Feb 25, 2026Updated 8 months ago
- Genome browser 🧬👀🚀☆35Updated this week
- A rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.☆34Oct 14, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool to detect acquired AMR genes directly from long read sequencing data.☆33Jan 31, 2026Updated 9 months ago
- One pure-Rust binary that finds genes in phages, viruses, giant viruses, crassphages, bacteria, archaea, eukaryotes — and raw sequencing …☆36Oct 14, 2026Updated 3 weeks ago
- Databases for wg/cgMLST analysis with the PN2.0 software☆10May 7, 2026Updated 6 months ago
- Simple Python interface to CoverM's fast coverage estimation functions☆11Dec 20, 2024Updated last year
- Tool intended to pull out sequences and annotations between insertion sites specified by the user.☆15Apr 10, 2026Updated 6 months ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆18Nov 19, 2025Updated 11 months ago
- ONEcode package to replace SAM/BAM, especially for eDNA mapping to everything☆20Updated this week
- Reproducible hybrid metagenomics with MAG recovery and strain-level resolution☆11Aug 20, 2026Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆333Oct 10, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆21Updated this week
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆53May 5, 2026Updated 6 months ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆15Updated this week
- A modular pipeline for constructing Pathway/Genome Databases from environmental sequence information☆13Apr 4, 2025Updated last year
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- A metagenome assembler for the linked-reads with high-barcode specificity☆10Feb 27, 2026Updated 8 months ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Mar 7, 2024Updated 2 years ago
- snakemake-powered cli to download genomes using NCBI datasets☆15Aug 14, 2025Updated last year
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆33Sep 18, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54Updated this week
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆35Aug 26, 2024Updated 2 years ago
- Guess till correct: Gungnir codec enabling high error-tolerance and low-redundancy DNA storage through substantial computing power☆13Mar 2, 2026Updated 8 months ago
- Metagenome Clustering and Association Tool.☆30Sep 22, 2026Updated last month
- Skiver: Reference-free quality control of (meta)genomic sequencing datasets using (k, v)-mer sketches☆13Aug 19, 2026Updated 2 months ago
- SuperSampler, an efficient scaled size sketching and sketch comparison tool☆11Nov 13, 2023Updated 2 years ago
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- A novel method for sequence similarity estimation☆27Mar 23, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆29Feb 6, 2023Updated 3 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆86Jul 24, 2026Updated 3 months ago
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated 2 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆25Nov 25, 2025Updated 11 months ago
- Needleman-Wunsch Alignment in Go☆12Nov 9, 2020Updated 5 years ago
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Updated this week