syntheke / bayesR
Bayesian hierarchical model for complex trait analysis
☆44Updated last year
Alternatives and similar repositories for bayesR:
Users that are interested in bayesR are comparing it to the libraries listed below
- Generalized linear Mixed Model Association Tests☆41Updated last year
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆49Updated last year
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆57Updated 4 months ago
- ☆30Updated 3 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆30Updated last year
- RCC workshop, "Analysis of Genetic Data 2: Mapping Genome-wide Associations."☆24Updated last year
- Canonical SGE cluster genotype imputation pipeline☆12Updated 9 years ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆82Updated 2 years ago
- tools to efficiently retrieve and calculate LD☆33Updated 3 years ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆37Updated 3 months ago
- Statistical tools for Quantitative Genetic Analyses☆36Updated 2 weeks ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆41Updated 3 weeks ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆33Updated 7 years ago
- Effective Computing—Resources for Computational Biologists☆26Updated 4 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- ☆25Updated 3 years ago
- R package to perform Bayesian Genome-Wide Association Studies☆39Updated last year
- Read PLINK BED/BIM/FAM files into R☆40Updated 3 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆32Updated 5 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆47Updated last week
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- Representation and manipulation of genomic intervals☆45Updated 4 months ago
- Enhanced version of the FastQTL QTL mapper☆64Updated 2 years ago
- An htmlwidget version of igv, for RStudio and Shiny apps☆38Updated 4 months ago
- Sequence kernel association test (SKAT)☆47Updated last month
- Experimental EIGENSOFT performance improvements.☆22Updated 10 years ago
- Manhattan++☆28Updated last year
- An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations☆12Updated 7 years ago
- ☆40Updated 6 months ago