cryoEM-CNIO / BinderFlowView external linksLinks
Code for running BinderFlow
☆60Nov 21, 2025Updated 2 months ago
Alternatives and similar repositories for BinderFlow
Users that are interested in BinderFlow are comparing it to the libraries listed below
Sorting:
- ☆15Sep 29, 2025Updated 4 months ago
- ☆21Oct 9, 2025Updated 4 months ago
- A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://pr…☆37Jan 21, 2026Updated 3 weeks ago
- ☆14Oct 5, 2024Updated last year
- ☆46Nov 19, 2025Updated 2 months ago
- ☆13May 19, 2025Updated 8 months ago
- Extension of ThermoMPNN for double mutant predictions☆53Oct 8, 2025Updated 4 months ago
- In silico directed evolution of peptide binders with AlphaFold☆261Jan 5, 2026Updated last month
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2x☆30Jan 23, 2026Updated 3 weeks ago
- Flexibility-conditioned protein structure design☆32Jul 5, 2025Updated 7 months ago
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆47Updated this week
- Official implementation for our paper: Repurposing AlphaFold3-like Protein Folding Models for Antibody Sequence and Structure Co-design☆39Jan 8, 2026Updated last month
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 2 years ago
- ☆239Updated this week
- ☆15Jun 3, 2025Updated 8 months ago
- Rapid Generation of Rare Event Pathways Using Direction Guided Adaptive Sampling: From Ligand Unbinding to Protein (Un)Folding☆38Nov 25, 2025Updated 2 months ago
- MD DaVis: A python package to analyze molecular dynamics trajectories of proteins☆17Feb 17, 2025Updated 11 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆66Dec 15, 2025Updated last month
- OVO, an open-source ecosystem for de novo protein design☆104Jan 12, 2026Updated last month
- Metrics for our protein design competitions.☆35Nov 1, 2024Updated last year
- ☆74Mar 19, 2025Updated 10 months ago
- Design a local part of a protein☆20Jan 12, 2023Updated 3 years ago
- Python code to run Thermal Titration Molecular Dynamics (TTMD) simulations☆20Sep 12, 2024Updated last year
- Efficient manipulation of protein structures in Python☆63Sep 27, 2025Updated 4 months ago
- Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models☆43Dec 16, 2024Updated last year
- ReaSyn is a model for predicting a molecule's synthesis pathway, reaction steps from building blocks to final product(s), using an encode…☆74Jan 11, 2026Updated last month
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆27Aug 21, 2025Updated 5 months ago
- ParametrizANI - Fast, Accurate and Free Dihedral Parametrization in the Cloud with TorchANI☆22Jul 28, 2025Updated 6 months ago
- composite-objective protein design☆243Feb 6, 2026Updated last week
- ☆142Aug 17, 2022Updated 3 years ago
- A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins☆24Jan 25, 2024Updated 2 years ago
- Official repository for the ProteinDJ protein design pipeline☆87Jan 21, 2026Updated 3 weeks ago
- ☆536Feb 6, 2025Updated last year
- ☆12Jun 16, 2023Updated 2 years ago
- The central entry point to the P2Rank project with links to the individual projects, including references to documentation, datasets, etc…☆13May 23, 2025Updated 8 months ago
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆11Dec 10, 2023Updated 2 years ago
- Tokenizing Loops of Antibodies☆24Nov 23, 2025Updated 2 months ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated 9 months ago
- ☆11Aug 5, 2020Updated 5 years ago