a golang library to read, write and manipulate files in the variant call format.
☆74Sep 2, 2025Updated 9 months ago
Alternatives and similar repositories for vcfgo
Users that are interested in vcfgo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- biogo high throughput sequencing repository☆133Aug 28, 2025Updated 9 months ago
- tabix file access with golang using biogo machinery☆10Jul 1, 2025Updated 11 months ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Jul 12, 2020Updated 5 years ago
- A lightweight and high-performance bioinformatics package in Golang☆96May 13, 2026Updated last month
- biogo is a bioinformatics library for Go☆406Mar 28, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated 8 months ago
- Go / Golang Bioinformatics Library☆46Oct 13, 2024Updated last year
- Variant Call Format parser library for Go☆25Aug 11, 2017Updated 8 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 6 years ago
- cython + htslib == fast VCF and BCF processing☆445May 14, 2026Updated last month
- probability of mendelian error in trios.☆11Jan 27, 2016Updated 10 years ago
- Pipeline for structural variation detection in cohorts☆52Sep 14, 2021Updated 4 years ago
- A collection of genomics software tools written in Go (golang).☆91Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- BED QC tool (in the making)☆18Aug 19, 2022Updated 3 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆407May 1, 2026Updated last month
- GCP Variant Transforms☆147May 21, 2026Updated 3 weeks ago
- UMN tracker production software for Mu2e☆11Jan 29, 2025Updated last year
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- Numerical Encoding for Human Genetic Variants☆42Jun 8, 2023Updated 3 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- finding conserved regions in highly diverse genomes☆16May 25, 2026Updated 3 weeks ago
- genetic variant expressions, annotation, and filtering for great good.☆275May 12, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SCAT software for "Smoothed and Continuous Assignment Tests"☆29Mar 29, 2023Updated 3 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆185Apr 12, 2024Updated 2 years ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- vcf file manipulation☆22Jul 9, 2015Updated 10 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Jul 22, 2015Updated 10 years ago
- Burrows-Wheeler Transform and FM-index in golang☆20Apr 7, 2023Updated 3 years ago
- Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104☆19Aug 4, 2023Updated 2 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Feb 23, 2023Updated 3 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- kaamer - protein identification based on amino acid kmers☆11Mar 7, 2023Updated 3 years ago
- ☆18Mar 5, 2017Updated 9 years ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Genomics Research Container Architecture☆48Aug 30, 2019Updated 6 years ago
- Analyse enhancer strength based on MPRA experiments.☆12Nov 12, 2020Updated 5 years ago
- Extensible quality control dashboard built around FASTQ assessment.☆15May 17, 2019Updated 7 years ago