Alternatives and similar repositories for vcfgo

Users that are interested in vcfgo are comparing it to the libraries listed below

• shenwei356 / bio
  A lightweight and high-performance bioinformatics package in Golang
  ☆95Updated last month
• biogo / hts
  biogo high throughput sequencing repository
  ☆132Updated 3 months ago
• pbenner / gonetics
  Go / Golang Bioinformatics Library
  ☆45Updated last year
• vertgenlab / gonomics
  A collection of genomics software tools written in Go (golang).
  ☆86Updated this week
• shenwei356 / go4bio
  Golang for Bioinformatics
  ☆31Updated 9 years ago
• grailbio / bio
  Bioinformatic infrastructure libraries
  ☆78Updated 5 years ago
• brentp / bigly
  a pileup library that embraces the huge
  ☆43Updated 5 years ago
• brentp / irelate
  Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang
  ☆47Updated 5 years ago
• maragkakislab / samql
  SQL-like query language for the SAM/BAM file format
  ☆29Updated 2 years ago
• brentp / rare-disease-wf
  (WIP) best-practices workflow for rare disease
  ☆62Updated last year
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆59Updated 8 years ago
• vatlab / varianttools
  software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis
  ☆30Updated 3 years ago
• tfwillems / HipSTR
  Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
  ☆101Updated 2 years ago
• Illumina / Pisces
  Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
  ☆98Updated 3 years ago
• seandavi / GFFutils
  Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach
  ☆36Updated 14 years ago
• joiningdata / lollipops
  Lollipop-style mutation diagrams for annotating genetic variations.
  ☆195Updated last year
• brentp / goleft
  goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
  ☆224Updated 2 months ago
• jteutenberg / downpore
  Suite of tools for use in genome assembly and consensus. Work in progress.
  ☆31Updated 4 years ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated last year
• nygenome / Conpair
  Concordance and contamination estimator for tumor–normal pairs
  ☆58Updated last year
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• lh3 / fermi-lite
  Standalone C library for assembling Illumina short reads in small regions
  ☆72Updated 2 years ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆67Updated 3 years ago
• compbiocore / VariantVisualization.jl
  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
  ☆86Updated 2 years ago
• lpryszcz / bin
  My bioinfo toolbox
  ☆50Updated 10 months ago
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆90Updated last year
• macarthur-lab / igv_utils
  utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.
  ☆49Updated 6 years ago
• PubuduSaneth / cnvScan
  CNV screening and annotation tool
  ☆25Updated 9 years ago
• opencb / hpg-aligner
  HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
  ☆34Updated 8 years ago
• statgen / bamUtil
  ☆91Updated 3 years ago