brentp / vcfgo
a golang library to read, write and manipulate files in the variant call format.
☆68Updated 3 months ago
Alternatives and similar repositories for vcfgo:
Users that are interested in vcfgo are comparing it to the libraries listed below
- biogo high throughput sequencing repository☆125Updated 9 months ago
- A lightweight and high-performance bioinformatics package in Golang☆92Updated 4 months ago
- Go / Golang Bioinformatics Library☆45Updated 3 months ago
- a pileup library that embraces the huge☆42Updated 4 years ago
- A collection of genomics software tools written in Go (golang).☆83Updated this week
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 5 years ago
- Bioinformatic infrastructure libraries☆77Updated 4 years ago
- Golang for Bioinformatics☆31Updated 8 years ago
- WDL’s and Dockerfiles for assembly QC process☆63Updated this week
- SQL-like query language for the SAM/BAM file format☆26Updated last year
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆91Updated 2 months ago
- VCF-kit: Assorted utilities for the variant call format☆126Updated 5 months ago
- ☆89Updated 3 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆102Updated 2 years ago
- Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104☆19Updated last year
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆218Updated 3 months ago
- Population-scale genotyping using pangenome graphs☆177Updated last week
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆75Updated 9 months ago
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆106Updated last week
- Variant calling tool for long-read sequencing data☆102Updated 2 months ago
- Lollipop-style mutation diagrams for annotating genetic variations.☆187Updated 3 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- A suite of tools for detecting expansions of short tandem repeats☆80Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- A tool to genotype CYP2D6 with WGS data☆51Updated last year
- ☆82Updated 6 years ago
- NEAT read simulation tools☆97Updated 2 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆89Updated last month
- ☆94Updated 2 years ago