pbenner / gonetics

Related projects ⓘ

Alternatives and complementary repositories for gonetics

• brentp / irelate
  Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang
  ☆47Updated 4 years ago
• shenwei356 / go4bio
  Golang for Bioinformatics
  ☆31Updated 8 years ago
• jteutenberg / downpore
  Suite of tools for use in genome assembly and consensus. Work in progress.
  ☆31Updated 3 years ago
• brentp / bigly
  a pileup library that embraces the huge
  ☆42Updated 4 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆28Updated 3 months ago
• vatlab / varianttools
  software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis
  ☆31Updated 2 years ago
• grailbio / bio
  Bioinformatic infrastructure libraries
  ☆76Updated 4 years ago
• fulcrumgenomics / guide-counter
  A better, faster way to count guides in CRISPR screens.
  ☆27Updated last month
• maragkakislab / samql
  SQL-like query language for the SAM/BAM file format
  ☆26Updated last year
• opencb / hpg-aligner
  HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
  ☆34Updated 7 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆33Updated last year
• shenwei356 / bio
  A lightweight and high-performance bioinformatics package in Golang
  ☆92Updated last month
• brentp / rare-disease-wf
  (WIP) best-practices workflow for rare disease
  ☆58Updated 4 months ago
• pachterlab / kallisto_paper_analysis
  Analysis from kallisto paper
  ☆32Updated 8 years ago
• biogo / hts
  biogo high throughput sequencing repository
  ☆125Updated 7 months ago
• Illumina / Isaac4
  Isaac aligner version 4
  ☆17Updated 2 years ago
• will-rowe / hulk
  Histosketching Using Little Kmers
  ☆55Updated last year
• ChristopherWilks / snaptron
  fast webservices based query tool for large sets of genomic features
  ☆25Updated last year
• Oshlack / STRetch
  Method for detecting STR expansions from short-read sequencing data
  ☆62Updated 2 years ago
• DEploid-dev / DEploid
  dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…
  ☆20Updated 3 weeks ago
• Nazeeefa / awesome-sequencing-tech-papers
  A collection of publications on comparison of high-throughput sequencing technologies.
  ☆26Updated 6 months ago
• quinlan-lab / vcftidy
  normalize, left-align, trim, validate and clean VCF files
  ☆20Updated 9 years ago
• namsyvo / IVC
  Integrated Variant Caller
  ☆17Updated 6 years ago
• bioinformatics-centre / BayesTyper
  A method for variant graph genotyping based on exact alignment of k-mers
  ☆87Updated 5 years ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆65Updated last year
• nf-core / deepvariant
  Please consider using/contributing to https://github.com/nf-core/sarek
  ☆40Updated 3 years ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆29Updated 5 months ago
• Yandell-Lab / taxonomer_0.5
  full taxonomer cython repository
  ☆22Updated 4 years ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆24Updated 6 months ago