Python script for creating and analyzing simulated bpp datasets published in Flouris et al. 2019.
☆10May 12, 2019Updated 6 years ago
Alternatives and similar repositories for NetworkMSCSimulations
Users that are interested in NetworkMSCSimulations are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆112Updated this week
- For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics☆13Oct 1, 2024Updated last year
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 3 years ago
- A birth-death-hybridization based phylogenetic network simulator.☆11Oct 2, 2024Updated last year
- ☆16Apr 14, 2021Updated 4 years ago
- ☆23Updated this week
- Tutorial for visualising admixture on a map☆24Jan 4, 2021Updated 5 years ago
- DNA sequence editor and alignment viewer for emacs☆19Feb 20, 2026Updated last month
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- phylogenetic networks using ggplot2 and ggtree☆11Oct 22, 2025Updated 5 months ago
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- ☆21Jan 29, 2024Updated 2 years ago
- phyloGAN is a Generative Adversarial Network (GAN) that infers phylognetic relationships.☆11Jul 8, 2024Updated last year
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- Visualization of the COVID-19 trend with Matplotlib and GeoPandas☆10Feb 28, 2021Updated 5 years ago
- ☆95Jun 7, 2025Updated 9 months ago
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆18Feb 11, 2026Updated last month
- ☆22Feb 26, 2026Updated 3 weeks ago
- ☆12Aug 13, 2024Updated last year
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Jul 21, 2021Updated 4 years ago
- Presentation at the Joint Statistical Meetings 2021☆12Aug 8, 2021Updated 4 years ago
- Data files useful for BLUPF90 programs☆19Feb 26, 2021Updated 5 years ago
- An R interface for the ADMIXTOOLS software☆35Nov 24, 2025Updated 3 months ago
- An R function to compute Concordance Factors from SNP datasets☆15Dec 4, 2025Updated 3 months ago
- ☆13Apr 30, 2019Updated 6 years ago
- R package to detect splicing QTLs (sQTLs)☆13Jul 3, 2023Updated 2 years ago
- ☆11Aug 2, 2024Updated last year
- ☆11Mar 11, 2025Updated last year
- Display utilities for phylogenetic trees and networks☆19Mar 9, 2026Updated 2 weeks ago
- Wide and Deep Neural Net for predicting TB resistance from genotypic data☆14Dec 9, 2019Updated 6 years ago
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- Phylogenetic Network Inference without ILS☆19Jul 31, 2022Updated 3 years ago
- Code repository of "Deep generative design of RNA family sequences"☆40Nov 10, 2025Updated 4 months ago
- ☆12Feb 16, 2026Updated last month
- ☆16Mar 10, 2026Updated last week
- Nunux Keeper CLI☆11Oct 3, 2017Updated 8 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 4 years ago
- cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequen…☆23Jun 17, 2025Updated 9 months ago