stjude / punctatoolsLinks
Detection, colocalization, and quantification of spots / puncta
☆13Updated 2 years ago
Alternatives and similar repositories for punctatools
Users that are interested in punctatools are comparing it to the libraries listed below
Sorting:
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆220Updated last year
- Notebooks to illustrate how BigFISH is working.☆11Updated 2 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆134Updated 5 years ago
- User-affordable and versatile light-sheet microscopy system for cleared specimens☆24Updated 4 months ago
- ImageJ macro for the analysis of foci (e.g. DNA damage) in nuclei/cells☆18Updated 2 weeks ago
- Accurate and efficient spot detection for microscopy data☆92Updated this week
- TrackMate is your buddy for your everyday tracking.☆206Updated last week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆103Updated last month
- Deconvolution of widefield microscopy images and generation of point spread functions☆49Updated 3 weeks ago
- ☆12Updated 4 years ago
- ☆86Updated 4 months ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆63Updated 2 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated 2 months ago
- ABBA, controlled from python☆15Updated 4 months ago
- All design files and scripts necessary for the construction and use of the optoPlate-96☆11Updated 3 years ago
- ☆45Updated 5 years ago
- ☆16Updated last year
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated 3 months ago
- ☆11Updated 4 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆178Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆95Updated last month
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆52Updated last week
- ☆12Updated last year
- MSSR Plugin☆13Updated 9 months ago
- Cell tracking and segmentation software☆127Updated last week
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 9 months ago
- Lectures for a napari training course☆50Updated last year
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆23Updated 3 years ago
- StarDist plugin for ImageJ☆31Updated 3 years ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago