stjude / punctatoolsLinks
Detection, colocalization, and quantification of spots / puncta
☆14Updated 2 years ago
Alternatives and similar repositories for punctatools
Users that are interested in punctatools are comparing it to the libraries listed below
Sorting:
- Notebooks to illustrate how BigFISH is working.☆11Updated 3 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆230Updated 2 years ago
- TrackMate is your buddy for your everyday tracking.☆215Updated 2 weeks ago
- Toolbox for the analysis of smFISH images.☆67Updated 2 years ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆63Updated 2 years ago
- ☆16Updated last year
- ☆12Updated 4 years ago
- Accurate and efficient spot detection for microscopy data☆105Updated 2 weeks ago
- User-affordable and versatile light-sheet microscopy system for cleared specimens☆25Updated 7 months ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆54Updated this week
- ☆12Updated 7 months ago
- Cell tracking and segmentation software☆150Updated 3 weeks ago
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated last year
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆39Updated 5 months ago
- ☆12Updated last year
- ABBA, controlled from python☆15Updated this week
- Lectures for a napari training course☆51Updated 2 years ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆182Updated last week
- ImageJ macro for the analysis of foci (e.g. DNA damage) in nuclei/cells☆21Updated last week
- Detection of Molecules plugin for ImageJ, Utrecht University☆15Updated 2 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆106Updated 2 months ago
- The ImageJ framework for quantification of neuronal anatomy☆52Updated this week
- StarDist plugin for ImageJ☆30Updated 3 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 11 months ago
- ☆51Updated 6 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images