stjude / punctatools
Detection, colocalization, and quantification of spots / puncta
☆12Updated last year
Alternatives and similar repositories for punctatools:
Users that are interested in punctatools are comparing it to the libraries listed below
- Notebooks to illustrate how BigFISH is working.☆13Updated 2 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆133Updated 4 years ago
- ☆10Updated 4 years ago
- Toolbox for the analysis of smFISH images.☆58Updated last year
- Accurate and efficient spot detection for microscopy data☆68Updated last week
- Lectures for a napari training course☆50Updated last year
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆73Updated last week
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Updated 2 years ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆45Updated this week
- The 2023 version of cellPLATO☆13Updated 2 months ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆201Updated last year
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 3 months ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- ☆68Updated last month
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆97Updated last year
- CellProfiler tutorial pipelines and images☆86Updated 3 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆33Updated last month
- ☆38Updated 6 months ago
- Cell tracking and segmentation software☆103Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆40Updated 3 months ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆67Updated 4 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 2 months ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆23Updated 3 years ago
- DeepSpot is a deep learning method for the enhancement of mRNA fluorescent spots in microscopy images☆13Updated 3 years ago
- Browse your OMERO database from within napari.☆35Updated 2 weeks ago
- A platform for compiling, analyzing, and exploring tracking data☆42Updated 3 weeks ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆143Updated this week
- ☆45Updated 3 months ago