stjude / punctatools
Detection, colocalization, and quantification of spots / puncta
☆12Updated last year
Alternatives and similar repositories for punctatools:
Users that are interested in punctatools are comparing it to the libraries listed below
- Notebooks to illustrate how BigFISH is working.☆13Updated 2 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆133Updated 4 years ago
- Toolbox for the analysis of smFISH images.☆59Updated last year
- ☆10Updated 4 years ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆201Updated last year
- The 2023 version of cellPLATO☆13Updated 3 months ago
- Accurate and efficient spot detection for microscopy data☆68Updated last month
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 4 months ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- DeepSpot is a deep learning method for the enhancement of mRNA fluorescent spots in microscopy images☆14Updated 3 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 3 months ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- Lectures for a napari training course☆50Updated last year
- Deconvolution of widefield microscopy images and generation of point spread functions☆45Updated this week
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆97Updated 2 years ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆74Updated 3 weeks ago
- Loading and handling microscopy data in blender☆111Updated 3 weeks ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆27Updated last week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆145Updated this week
- ☆15Updated 6 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- CellProfiler tutorial pipelines and images☆89Updated 3 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆34Updated last month
- Cell tracking and segmentation software☆103Updated this week
- ☆38Updated 6 months ago
- The ImageJ framework for quantification of neuronal anatomy☆46Updated this week
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆67Updated 5 months ago
- User-affordable and versatile light-sheet microscopy system for cleared specimens☆17Updated 11 months ago