Python implementation of Monocle
☆33Aug 21, 2025Updated 8 months ago
Alternatives and similar repositories for py-monocle
Users that are interested in py-monocle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Jan 12, 2024Updated 2 years ago
- polyApipe☆19Feb 10, 2025Updated last year
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Jul 22, 2025Updated 9 months ago
- FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.☆15Apr 30, 2026Updated last week
- A python port of the R package SCTransform:☆21Jul 10, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆25Dec 2, 2021Updated 4 years ago
- ☆30Jan 22, 2025Updated last year
- This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…☆11Feb 7, 2023Updated 3 years ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆25Jun 14, 2024Updated last year
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆18Sep 19, 2025Updated 7 months ago
- BioTuring Cell Segmentation☆14Mar 19, 2025Updated last year
- ☆27Oct 22, 2025Updated 6 months ago
- SJTU跑步打卡上传☆38Mar 6, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis☆19Apr 23, 2025Updated last year
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated 2 years ago
- A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS☆12Nov 1, 2018Updated 7 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆25Feb 26, 2026Updated 2 months ago
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated last year
- Why lasso can't produce sparse solution in pytorch☆21Jan 26, 2021Updated 5 years ago
- ☆12Aug 6, 2025Updated 9 months ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Sep 10, 2024Updated last year
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆18Mar 27, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Analyze 3'UTR usage in single-cell data.☆15Sep 25, 2021Updated 4 years ago
- ☆10Jul 13, 2022Updated 3 years ago
- Skip the peaks and expose RNA-binding in CLIP data☆10Apr 29, 2026Updated last week
- An analytics package for single cell data☆22May 18, 2022Updated 3 years ago
- Repository for storing prototype functionality implementations for the BKP☆47Updated this week
- Join subcellular Visium HD bins into cells☆141Nov 4, 2025Updated 6 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆77Nov 11, 2025Updated 5 months ago
- trackc aims to produce beautiful genome tracks that are highly customizable☆18Jan 21, 2026Updated 3 months ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆204Apr 30, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts☆12Mar 22, 2023Updated 3 years ago
- Pytorch implementation of DeePromoter Active sequence detection for promoter(DNA subsequence regulates transcription initiation of the ge…☆13Jul 8, 2021Updated 4 years ago
- ☆19Jul 22, 2025Updated 9 months ago
- ☆17Jun 22, 2024Updated last year
- Creating a simple Docker image to help perform comparisons for FASTQ compression☆42Mar 11, 2023Updated 3 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆41Nov 18, 2025Updated 5 months ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated 11 months ago