tlubitz / parameter_balancing
Software tool for metabolic modelling in Systems Biology
☆10Updated 4 years ago
Alternatives and similar repositories for parameter_balancing:
Users that are interested in parameter_balancing are comparing it to the libraries listed below
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- Symbolic Kinetic Models with Python☆31Updated this week
- MaxEnt code for fitting simulation outcomes/statistical models to observations☆16Updated 2 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 6 months ago
- JBEI Quantitative Metabolic Modeling library☆12Updated 5 years ago
- A python toolbox for 13C metabolic flux analysis☆20Updated 6 months ago
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆21Updated 3 months ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆17Updated 9 months ago
- BRENDA parser in python☆21Updated 2 years ago
- A Universal Modeling Language for Metabolic Flux Analysis☆12Updated 2 months ago
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆28Updated 2 years ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆20Updated 2 weeks ago
- Python package for creating, calibrating and simulating RBA models☆11Updated last year
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆27Updated 2 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆37Updated last year
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Efficient random sampling for COBRA models☆13Updated 3 years ago
- Interpretable genotype-phenotype landscape modeling☆35Updated last year
- C++ Accelerated Python Diffusion Maps Library☆23Updated 6 years ago
- Python framework for multi-parameter optimization and evaluation of protein folding models☆16Updated 3 years ago
- ☆20Updated 3 years ago
- Python utilities for SBML☆40Updated last month
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Updated 3 years ago
- Massively-Parallel Natural Extension of Reference Frame☆30Updated 2 years ago
- ☆35Updated 5 years ago
- ☆12Updated last year
- Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape☆11Updated 2 years ago
- A modular compiler for biological chemical reaction networks☆43Updated last week
- Learning with uncertainty for biological discovery and design☆34Updated last year