tlubitz / parameter_balancingLinks
Software tool for metabolic modelling in Systems Biology
☆10Updated 4 years ago
Alternatives and similar repositories for parameter_balancing
Users that are interested in parameter_balancing are comparing it to the libraries listed below
Sorting:
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆21Updated 4 months ago
- Symbolic Kinetic Models with Python☆32Updated 2 months ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆29Updated 4 months ago
- GeneDisco is a benchmark suite for evaluating active learning algorithms for experimental design in drug discovery.☆38Updated 2 years ago
- Whole-cell modeling tutorials☆16Updated 5 years ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Updated 4 years ago
- Differentiable Euler Characteristic Transform☆17Updated last year
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆34Updated 3 years ago
- ☆24Updated 2 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆17Updated last year
- Python library (C++ backend) for degree-preserving network randomization☆14Updated 5 years ago
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆17Updated 3 years ago
- Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions☆24Updated 2 years ago
- ☆36Updated 6 years ago
- Interpretable genotype-phenotype landscape modeling☆35Updated last year
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- ☆25Updated 3 years ago
- Learning structural motif representations for efficient protein structure search☆19Updated 8 years ago
- Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)☆14Updated 10 months ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆30Updated 2 years ago
- TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics☆120Updated 11 months ago
- Benchmark for Biophysical Sequence Optimization Algorithms☆20Updated 2 months ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆39Updated 2 years ago
- Release of the whole cell E. coli model.☆68Updated 7 months ago
- 2022 PhysiCell Hackathon and Workshop☆12Updated 3 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆14Updated 3 months ago
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆29Updated 3 years ago
- C++ Accelerated Python Diffusion Maps Library☆23Updated 6 years ago
- ☆12Updated 2 years ago