tlubitz / parameter_balancingLinks
Software tool for metabolic modelling in Systems Biology
☆10Updated 5 years ago
Alternatives and similar repositories for parameter_balancing
Users that are interested in parameter_balancing are comparing it to the libraries listed below
Sorting:
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆26Updated 9 months ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- Symbolic Kinetic Models with Python☆34Updated 7 months ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆29Updated 9 months ago
- Differentiable Euler Characteristic Transform☆17Updated last year
- C++ Accelerated Python Diffusion Maps Library☆23Updated 7 years ago
- ☆12Updated 2 years ago
- Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions☆24Updated 2 years ago
- GeneDisco is a benchmark suite for evaluating active learning algorithms for experimental design in drug discovery.☆40Updated 2 years ago
- Build-A-Cell protocol for making liposomes☆13Updated last year
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- Exploring the space of drug combinations to discover synergistic drugs using Active Learning☆24Updated last year
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆33Updated 3 years ago
- MaxEnt code for fitting simulation outcomes/statistical models to observations☆16Updated 3 years ago
- An efficient method for the conversion from internal to Cartesian coordinates that utilizes the platform-agnostic JAX Python library.☆18Updated last year
- ☆36Updated 6 years ago
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆16Updated 3 years ago
- ☆32Updated 3 months ago
- ☆13Updated 4 years ago
- Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)☆15Updated last year
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆14Updated 4 months ago
- Benchmark for Biophysical Sequence Optimization Algorithms☆20Updated 7 months ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆41Updated 10 months ago
- Fast computation of diffusion maps and geometric harmonics in Python. Moved to https://git.sr.ht/~jmbr/diffusion-maps☆42Updated 4 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- Code corresponding to the paper Diffusion Earth Mover's Distance and Distribution Embeddings☆38Updated last year
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- Convenient Interface to Inverse Ising (ConIII)☆21Updated 3 months ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆19Updated last year
- A flux balance analysis machine learning classifier for microbial GWAS☆14Updated 6 years ago