tlubitz / parameter_balancing
Software tool for metabolic modelling in Systems Biology
☆10Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for parameter_balancing
- Dynamic Flux Balance analysis in Python☆11Updated 8 years ago
- Symbolic Kinetic Models with Python☆30Updated 2 months ago
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆21Updated this week
- BRENDA parser in python☆20Updated 2 years ago
- Interpretable genotype-phenotype landscape modeling☆35Updated 11 months ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated last year
- ☆22Updated last year
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆28Updated 2 years ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆17Updated 3 years ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆20Updated 4 months ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 2 months ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆38Updated last year
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- MaxEnt code for fitting simulation outcomes/statistical models to observations☆16Updated 2 years ago
- A modular compiler for biological chemical reaction networks☆40Updated 2 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆36Updated 2 years ago
- A python toolbox for 13C metabolic flux analysis☆19Updated 2 months ago
- A package for making MuE observation models in Edward2.☆13Updated 3 years ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆26Updated 2 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 2 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆17Updated 5 months ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 5 years ago
- ☆13Updated 2 years ago
- ☆23Updated last year
- JBEI Quantitative Metabolic Modeling library☆12Updated 4 years ago
- ☆11Updated last year
- C++ Accelerated Python Diffusion Maps Library☆23Updated 6 years ago
- A Universal Modeling Language for Metabolic Flux Analysis☆9Updated 6 months ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆35Updated last week
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆27Updated last year