EnzymeML / PyEnzymeLinks
🧬 - Data management and modeling framework based on EnzymeML.
☆26Updated 3 weeks ago
Alternatives and similar repositories for PyEnzyme
Users that are interested in PyEnzyme are comparing it to the libraries listed below
Sorting:
- Protein Structure Analysis☆63Updated 4 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- Python interface for the RCSB PDB search API.☆65Updated 10 months ago
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆63Updated 3 months ago
- ☆87Updated 2 months ago
- Source code and examples for AlphaFold Unmasked☆76Updated 2 months ago
- Python package to manage protein structures and their annotations☆45Updated last year
- A generic mechanism for describing views used in molecular visualizations☆57Updated 2 weeks ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated last year
- Parametric Building of de novo Functional Topologies☆44Updated 3 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- Fast and accurate protein structure prediction☆57Updated last year
- ☆26Updated 2 years ago
- Fast protein structure searching or your money back☆118Updated 3 weeks ago
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆86Updated 3 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆65Updated last month
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆29Updated 11 months ago
- PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.☆83Updated 11 months ago
- Foldy: a web-based platform for interactive protein structure analysis☆28Updated 3 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆63Updated 10 months ago
- A Rust implementation of the LightDock macromolecular docking software☆29Updated last year
- pyFoldX: python bindings for FoldX.☆54Updated 4 years ago
- Framework for the rapid modeling glycans and glycoproteins.☆31Updated 2 years ago
- A Unified Approach to Protein Engineering☆41Updated last year
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…☆63Updated 3 months ago
- Graph Network for protein-protein interface including language model features☆34Updated last year
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆79Updated 5 months ago
- Structure prediction of alternative protein conformations☆80Updated 11 months ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆97Updated 7 months ago
- A high performance drop-in replacement for Biotite's PDBFile.☆41Updated 8 months ago