BuildACell / bioCRNpylerLinks
A modular compiler for biological chemical reaction networks
β49Updated 2 months ago
Alternatives and similar repositories for bioCRNpyler
Users that are interested in bioCRNpyler are comparing it to the libraries listed below
Sorting:
- The DSSP building softwareβ50Updated 2 years ago
- π§rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs β¦β181Updated this week
- Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your coβ¦β76Updated 2 years ago
- Fast and accurate protein structure predictionβ57Updated last year
- Directed evolution of proteins in sequence space with gradientsβ94Updated 3 months ago
- A machine learning tool to improve the effectiveness of strain engineering in synthetic biologyβ61Updated last month
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.β34Updated 3 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.β41Updated 2 years ago
- β109Updated 2 years ago
- Interactive Python notebooks for PDBe API trainingβ58Updated last month
- This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the Universitβ¦β91Updated 2 weeks ago
- Peptide optimization with Machine Learningβ78Updated 3 years ago
- Sandbox for Deep-Learning based Computational Protein Designβ120Updated 2 months ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."β71Updated last year
- Physicochemical properties, indices and descriptors for amino-acid sequences.β113Updated 5 months ago
- An introductory workshop to protein language modelsβ17Updated 3 years ago
- PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.β83Updated 11 months ago
- Fast protein structure searching or your money backβ118Updated 3 weeks ago
- β20Updated 3 years ago
- Classification models for hemolytic nature and hemolytic activity predictions in peptide/protein sequencesβ16Updated 3 years ago
- Python interface for the RCSB PDB search API.β65Updated 10 months ago
- scripts and facilities for in-silico mutagenesis with FoldXβ66Updated last month
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysisβ63Updated 3 months ago
- Improved antibody structure-based design using inverse foldingβ152Updated 2 months ago
- Educational materials for, and related to, UC Irvine's Drug Discovery Computing Techniques course (PharmSci 175/275), currently taught byβ¦β164Updated 11 months ago
- Create DSSP and HSSP filesβ94Updated last year
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologiesβ94Updated 2 years ago
- To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.β27Updated 9 months ago
- Software for biomolecular electrostatics and solvation calculationsβ125Updated last year
- Framework for the rapid modeling glycans and glycoproteins.β31Updated 2 years ago