BuildACell / bioCRNpylerLinks
A modular compiler for biological chemical reaction networks
β47Updated 3 weeks ago
Alternatives and similar repositories for bioCRNpyler
Users that are interested in bioCRNpyler are comparing it to the libraries listed below
Sorting:
- Fast and accurate protein structure predictionβ55Updated 8 months ago
- π§rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs β¦β178Updated 2 months ago
- Protein design and variant prediction using autoregressive generative modelsβ112Updated last year
- Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your coβ¦β73Updated 2 years ago
- Directed evolution of proteins in sequence space with gradientsβ91Updated last year
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."β70Updated last year
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.β41Updated 2 years ago
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysisβ60Updated 2 months ago
- Fast protein structure searching or your money backβ114Updated last week
- Interactive Python notebooks for PDBe API trainingβ56Updated 2 weeks ago
- The DSSP building softwareβ47Updated 2 years ago
- Improved antibody structure-based design using inverse foldingβ139Updated last month
- β126Updated last year
- Physicochemical properties, indices and descriptors for amino-acid sequences.β103Updated last month
- Library containing code to manipulate mmCIF and PDB filesβ35Updated last week
- Peptide optimization with Machine Learningβ77Updated 2 years ago
- A Python framework for structural systems biologyβ109Updated 4 years ago
- This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the Universitβ¦β84Updated last week
- PDNET: A fully open-source framework for deep learning protein real-valued distancesβ36Updated 4 years ago
- An ultra-high-performance protein-protein docking for heterogeneous supercomputersβ65Updated last year
- A machine learning tool to improve the effectiveness of strain engineering in synthetic biologyβ58Updated 3 weeks ago
- Python interface for the RCSB PDB search API.β65Updated 6 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).β114Updated last year
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.β34Updated 3 years ago
- Sandbox for Deep-Learning based Computational Protein Designβ116Updated 3 months ago
- Collection of useful bioinformatic functions and tools for various computational biology pipelinesβ35Updated last week
- Deep learning for protein scienceβ37Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".β59Updated 4 years ago
- Create DSSP and HSSP filesβ93Updated last year
- Evolutionary couplings from protein and RNA sequence alignmentsβ282Updated last week