statgen / topmed_freeze3_callingLinks
TOPMed Freeze 3 variant calling pipeline
☆9Updated 6 years ago
Alternatives and similar repositories for topmed_freeze3_calling
Users that are interested in topmed_freeze3_calling are comparing it to the libraries listed below
Sorting:
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 6 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated 2 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Explore and filter structural variant calls from Lumpy and Delly VCF files☆8Updated 4 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- ☆24Updated 11 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Automated human exome/genome variants detection from FASTQ files☆22Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆23Updated 5 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- ☆14Updated last year
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- WGS Pipeline☆13Updated 7 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆18Updated 3 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- ☆24Updated 7 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 5 months ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- ☆11Updated 7 years ago
- TOPMed analysis pipeline☆52Updated last year