galaxyproject / planemo
Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.
☆91Updated 3 weeks ago
Alternatives and similar repositories for planemo:
Users that are interested in planemo are comparing it to the libraries listed below
- Galaxy Workflows maintained by the Intergalactic Workflow Commission☆32Updated last week
- A Python library for interacting with the Galaxy API☆90Updated last week
- Galaxy Admin Training☆60Updated 2 months ago
- ENA upload tool - script your Open Data upload to the European Nucleotide Archive☆28Updated this week
- List of tools included in https://usegalaxy.eu☆26Updated this week
- Testing building mulled containers for multi-requirement tools.☆70Updated this week
- Generating tool descriptors from bio.tools☆9Updated 6 years ago
- Utilities for building and managing bioconda recipes☆99Updated 2 weeks ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Updated 5 years ago
- Galaxy RNA workbench☆39Updated 4 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆42Updated last year
- The Ensembl Core Perl API and SQL schema☆81Updated this week
- Extension for Jupyter which integrates igv.js☆153Updated 2 years ago
- Contains a set of Galaxy Tools mostly written by the Galaxy Team.☆36Updated this week
- Galaxy Language Server to help in Galaxy (https://galaxyproject.org/) tool wrappers development.☆23Updated 2 months ago
- IGV Web App☆120Updated last week
- A collection of reusable WDL tasks. Category:Other☆85Updated last week
- Example Nextflow pipelines and programming techniques☆105Updated 2 months ago
- Collection of scripts for automated SARS-CoV-2 genome surveillance.☆22Updated last year
- GA4GH Variation Representation Python Implementation☆53Updated this week
- Collect of SO Ontologies☆96Updated 2 months ago
- Sequana: a set of Snakemake NGS pipelines☆145Updated this week
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated 7 months ago
- Docker Images tracking the stable Galaxy releases.☆230Updated this week
- Biopieces is a bioinformatic framework of tools easily used and easily created.☆141Updated 6 years ago
- Test data for MultiQC.☆22Updated this week
- Galaxy Tool wrappers☆116Updated this week
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆144Updated last week
- Nextflow Tower system☆148Updated 2 weeks ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago