bio-learn / biolearn
Machine learning tools for biomarker analysis
☆44Updated last month
Related projects: ⓘ
- Utilizing single-cell omics from patients tumor to predict response and resistance.☆59Updated last year
- GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data☆26Updated last month
- Create cell sentences from sequencing data☆21Updated last month
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆40Updated last month
- CAusal Reasoning for Network Identification with integer VALue programming in R☆56Updated 9 months ago
- Alignability testing and integration of single-cell data☆21Updated 6 months ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆39Updated last month
- ☆16Updated 2 months ago
- MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations☆63Updated this week
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆84Updated last week
- bioinformatics plotting and tools☆52Updated 3 months ago
- Code for the calculation and implementation of the PC Based epigenetic clocks☆48Updated 2 years ago
- CMap Notebooks for LINCS 2020 Workshop☆45Updated 2 years ago
- Knowledge-primed neural networks☆34Updated last year
- Functional Embedding of Gene Signatures☆31Updated 6 months ago
- CZ CELLxGENE Discover Census☆79Updated this week
- ACTIONet single-cell analysis framework☆36Updated this week
- An AI Agent for Fully Automated Multi-omic Analyses☆55Updated last month
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆50Updated 5 months ago
- ☆31Updated 2 years ago
- Data and papers related to epigenetic clocks predicting age☆18Updated 4 months ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆28Updated 2 months ago
- ☆26Updated 10 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆47Updated last year
- ☆43Updated 3 months ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆31Updated 5 months ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆61Updated last year
- software to detect doublets☆82Updated last month
- Open Targets python framework for post-GWAS analysis☆33Updated this week