maxibor / sam2lcaLinks
Lowest Common Ancestor from a SAM/BAM/CRAM alignment file
☆9Updated 10 months ago
Alternatives and similar repositories for sam2lca
Users that are interested in sam2lca are comparing it to the libraries listed below
Sorting:
- De novo VIral Genome Annotator☆21Updated 9 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- ☆14Updated 3 years ago
- Raspir, the rare species identifier☆11Updated last year
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated last year
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Dadaist2 🟨 Highway to R☆13Updated 3 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆9Updated 4 years ago
- Variant call verification☆16Updated last month
- ☆20Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- C++ tools for NCBI taxonomy tasks☆11Updated 3 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 6 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- ☆11Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated last year
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- ☆17Updated last year
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆11Updated last month
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆11Updated 6 months ago
- Resolving Species Level Classification Using Emu☆13Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 4 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last month