Montaging for microscopy imaging files
☆30Mar 12, 2026Updated last week
Alternatives and similar repositories for ITKMontage
Users that are interested in ITKMontage are comparing it to the libraries listed below
Sorting:
- MIST-inspired microscope image stitching package☆81Jan 29, 2026Updated last month
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 5 years ago
- Tools for accessing open data sets published by the Allen Institute for Brain Sciences☆15Jun 29, 2021Updated 4 years ago
- MERFISH decoding software☆26Aug 16, 2025Updated 7 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆166Feb 19, 2026Updated last month
- Fast and robust feature-based stitching algorithm for microscopic images☆15Jun 28, 2024Updated last year
- SCIFIO ImageIO plugin for ITK☆16Nov 12, 2025Updated 4 months ago
- Python tool for stitching histopathology tissue fragments into artificial whole-mounts.☆23Dec 5, 2025Updated 3 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Mar 2, 2026Updated 2 weeks ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- GPU accelerated image/volume processing in Python☆113Feb 10, 2026Updated last month
- ☆19Oct 28, 2024Updated last year
- Tools for distributed alignment of massive images☆94Mar 9, 2026Updated last week
- Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"☆18Aug 17, 2024Updated last year
- N-dimensional, multiresolution file format for Micro-Manager☆14Mar 13, 2026Updated last week
- Web-based interactive lens design tool.☆12Dec 17, 2022Updated 3 years ago
- img2vid☆21Dec 14, 2022Updated 3 years ago
- TensorFlow implementation of the diffeomorphic demons algorithm for medical image registration☆22Jul 4, 2024Updated last year
- ☆20Jul 23, 2022Updated 3 years ago
- Tiktorch☆12Feb 24, 2026Updated 3 weeks ago
- A fast multi-image tiff writer for Matlab☆18Jun 5, 2024Updated last year
- Scientific Visualisation Made Easy☆29Mar 1, 2026Updated 2 weeks ago
- Python bindings for MMCore, Micro-Manager's device control layer☆35Mar 10, 2026Updated last week
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Sep 15, 2025Updated 6 months ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- AnnotatorJ: ImageJ plugin for object annotation in 2D☆25Jul 12, 2025Updated 8 months ago
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆48Oct 28, 2025Updated 4 months ago
- Microscopy Image Stitching Tool☆164Aug 15, 2025Updated 7 months ago
- ☆53Apr 1, 2021Updated 4 years ago
- Convert torch model to/from caffe model easily☆12Nov 29, 2016Updated 9 years ago
- Efficient subtyping of ovarian cancer histopathology whole slide images using active sampling in multiple instance learning☆11Mar 19, 2024Updated 2 years ago
- Source code of SACD(Super-resolution with Auto-Correlation two-step Deconvolution)☆13Dec 12, 2022Updated 3 years ago
- ☆19Feb 17, 2026Updated last month
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- Histopathology whole slide image library☆16Mar 10, 2026Updated last week
- openASO is a project designed to identify regulatory regions of an RNA that can be targeted by antisense oligonucleotides.☆11Sep 30, 2021Updated 4 years ago
- ☆15Nov 28, 2018Updated 7 years ago
- ☆18Nov 2, 2024Updated last year
- ☆11May 16, 2023Updated 2 years ago