Montaging for microscopy imaging files
☆32Apr 25, 2026Updated 6 months ago
Alternatives and similar repositories for ITKMontage
Users that are interested in ITKMontage are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MERFISH decoding software☆30Aug 16, 2025Updated last year
- MIST-inspired microscope image stitching package☆83Jan 29, 2026Updated 9 months ago
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 6 years ago
- A slimmed down version of scran, based on the C++ library of the same name.☆10Oct 15, 2024Updated 2 years ago
- Tools for accessing open data sets published by the Allen Institute for Brain Sciences☆16Jun 29, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆182Aug 7, 2026Updated 2 months ago
- GPU accelerated image/volume processing in Python☆112Feb 10, 2026Updated 8 months ago
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆14Sep 29, 2026Updated last month
- Python tool for stitching histopathology tissue fragments into artificial whole-mounts.☆23Dec 5, 2025Updated 10 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆73Oct 5, 2026Updated 3 weeks ago
- Python package for microscope image stitching, robust to image pairs taken at different focal lengths and translations☆14Jul 29, 2023Updated 3 years ago
- Fullwave 2 beta version☆11Oct 27, 2021Updated 5 years ago
- CloudReg☆11Apr 5, 2024Updated 2 years ago
- Scientific Visualisation Made Easy☆30Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Microscopy Image Stitching Tool☆178Jul 28, 2026Updated 3 months ago
- Tools for distributed alignment of massive images☆95Oct 22, 2026Updated last week
- Panoramic image generation from 2D microscope images☆20Jun 17, 2021Updated 5 years ago
- ITK IO for images stored in OME-Zarr format.☆10Sep 4, 2025Updated last year
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated last year
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆59Jun 25, 2025Updated last year
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Aug 22, 2024Updated 2 years ago
- An ITK ImageIO module for the OpenSlide library.☆11Oct 21, 2026Updated last week
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆14Apr 30, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A collated library of additional MTEX functions & demonstration scripts.☆20Mar 10, 2025Updated last year
- The niivue mono repo☆30Updated this week
- This is the React implementation of Micro-Meta App, Microscopy Metadata for the real world!☆10Aug 25, 2026Updated 2 months ago
- N-dimensional, multiresolution file format for Micro-Manager☆16Jun 17, 2026Updated 4 months ago
- Your virtual engineering laboratory: design experiments, analyse measurements, and iterate with confidence.☆24Updated this week
- Fast and robust feature-based stitching algorithm for microscopic images☆19Jun 28, 2024Updated 2 years ago
- SynthRAD2025 Challenge – Task 1 solution for synthetic CT generation from MRI images.☆11Oct 6, 2026Updated 3 weeks ago
- ☆20Jul 23, 2022Updated 4 years ago
- Proposal for a set of APIs to support updating of DICOM instances via DICOMweb☆10Jun 12, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Web-based interactive lens design tool.☆14May 11, 2026Updated 5 months ago
- Image mapping using the LDDMM algorithm, implemented in tensorflow☆17Aug 18, 2021Updated 5 years ago
- Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"☆18Aug 17, 2024Updated 2 years ago
- TensorFlow implementation of the diffeomorphic demons algorithm for medical image registration☆23Jul 4, 2024Updated 2 years ago
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Aug 11, 2026Updated 2 months ago
- Musculoskeletal Analysis extension for 3D Slicer. Currently has cortical, cancellous, and bone density analysis.☆13May 2, 2024Updated 2 years ago
- img2vid☆22Dec 14, 2022Updated 3 years ago