Alternatives and similar repositories for ITKMontage

Users that are interested in ITKMontage are comparing it to the libraries listed below

• marrlab / BaSiC
  A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images
  ☆64Updated 8 months ago
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆39Updated this week
• smithk / cidre
  A general illumination correction method for optical microscopy.
  ☆42Updated 4 years ago
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆56Updated 4 months ago
• lens-biophotonics / ZetaStitcher
  ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
  ☆45Updated last week
• apeer-micro / apeer-ometiff-library
  Easily read and write ome-tiff images in python
  ☆28Updated last year
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆58Updated 4 months ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆33Updated 2 years ago
• imjoy-team / kaibu
  Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.
  ☆35Updated 7 months ago
• clij / clij-docs
  Online documentation and reference for CLIJ
  ☆28Updated 4 years ago
• haesleinhuepf / napari-simpleitk-image-processing
  Process images using SimpleITK in napari
  ☆22Updated 6 months ago
• gioda / FeARLesS
  4D reconstruction of developmental trajectories using spherical harmonics
  ☆23Updated 7 months ago
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆53Updated this week
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• serrob23 / falsecolor
  FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…
  ☆30Updated 4 years ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆29Updated 7 months ago
• MIDA-group / globalign
  Fast global mutual information-based rigid alignment in the Fourier domain
  ☆32Updated last year
• Ajaxels / MIB2
  Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…
  ☆35Updated last month
• scopetools / cudadecon
  GPU accelerated 3D image deconvolution using CUDA
  ☆39Updated last year
• JaneliaSciComp / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆77Updated 2 weeks ago
• allen-cell-animated / agave
  High quality visualization for volumetric image data
  ☆52Updated last week
• cgohlke / oiffile
  Read Olympus image files (OIF and OIB).
  ☆13Updated 6 months ago
• yfukai / m2stitch
  MIST-inspired microscope image stitching package
  ☆78Updated last year
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆70Updated 2 weeks ago
• 4DNucleome / PartSeg
  Tool for segmentation in bioimaging
  ☆35Updated last week
• tlambert03 / LLSpy
  Lattice light-sheet post-processing utility.
  ☆30Updated 2 weeks ago
• AiviaCommunity / 3D-RCAN
  Three-dimensional residual channel attention networks
  ☆54Updated 3 years ago
• hanjinliu / impy
  Speed up coding/extending image analysis in Python.
  ☆35Updated last month
• deepimagej / deepimagej-plugin
  The ImageJ plugin to run deep-learning models
  ☆98Updated 3 weeks ago
• jo-mueller / Slice2Volume
  Script that registers Histology slices to volumetric image data
  ☆11Updated 2 years ago