Montaging for microscopy imaging files
☆30Apr 3, 2026Updated last week
Alternatives and similar repositories for ITKMontage
Users that are interested in ITKMontage are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MIST-inspired microscope image stitching package☆81Jan 29, 2026Updated 2 months ago
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 5 years ago
- Tools for accessing open data sets published by the Allen Institute for Brain Sciences☆15Jun 29, 2021Updated 4 years ago
- MERFISH decoding software☆26Aug 16, 2025Updated 7 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆166Feb 19, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python tool for stitching histopathology tissue fragments into artificial whole-mounts.☆23Dec 5, 2025Updated 4 months ago
- Panoramic image generation from 2D microscope images☆20Jun 17, 2021Updated 4 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆73Updated this week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- GPU accelerated image/volume processing in Python☆113Feb 10, 2026Updated 2 months ago
- ☆19Oct 28, 2024Updated last year
- Tools for distributed alignment of massive images☆95Mar 31, 2026Updated last week
- Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"☆18Aug 17, 2024Updated last year
- N-dimensional, multiresolution file format for Micro-Manager☆14Mar 13, 2026Updated 3 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Web-based interactive lens design tool.☆12Dec 17, 2022Updated 3 years ago
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆58Jun 25, 2025Updated 9 months ago
- img2vid☆21Dec 14, 2022Updated 3 years ago
- TensorFlow implementation of the diffeomorphic demons algorithm for medical image registration☆22Jul 4, 2024Updated last year
- ☆20Jul 23, 2022Updated 3 years ago
- Tiktorch☆12Mar 31, 2026Updated last week
- A fast multi-image tiff writer for Matlab☆18Jun 5, 2024Updated last year
- Python bindings for MMCore, Micro-Manager's device control layer☆34Updated this week
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Sep 15, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- AnnotatorJ: ImageJ plugin for object annotation in 2D☆25Jul 12, 2025Updated 8 months ago
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆48Apr 1, 2026Updated last week
- Microscopy Image Stitching Tool☆170Aug 15, 2025Updated 7 months ago
- ☆53Apr 1, 2021Updated 5 years ago
- Convert torch model to/from caffe model easily☆12Nov 29, 2016Updated 9 years ago
- Efficient subtyping of ovarian cancer histopathology whole slide images using active sampling in multiple instance learning☆11Mar 19, 2024Updated 2 years ago
- ☆19Mar 26, 2026Updated 2 weeks ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 💽 A vl53l5cx library for esp32 using the esp-idf framework☆26Feb 21, 2025Updated last year
- ☆18Nov 2, 2024Updated last year
- Firebug-like dir() for Node.js.☆15Apr 9, 2011Updated 15 years ago
- ☆11May 16, 2023Updated 2 years ago
- This repository provides the dataset HEMIT for H&E to mIHC image-to-image translation task☆18Dec 11, 2024Updated last year
- A two-hour introduction to data for Python *or* R.☆10Apr 24, 2022Updated 3 years ago
- This package can be used to read image data using BioFormats into numpy arrays. It was initially created to read CZI image files, but sho…☆12May 21, 2021Updated 4 years ago