YeoLab / flotilla
Reproducible machine learning analysis of gene expression and alternative splicing data
☆121Updated last year
Related projects: ⓘ
- Library for manipulating genomic variants and predicting their effects☆81Updated 2 months ago
- DEPRECATED. Please visit our new repository (cytoscape/cyREST)☆28Updated 7 years ago
- GO enrichment with python -- pandas meets networkx☆87Updated 4 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated last year
- ☆40Updated this week
- ☆38Updated this week
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- ☆15Updated last year
- Yet Another Motif Discovery Algorithm☆51Updated 5 years ago
- This is a beginner's tutorial to Snakemake☆70Updated 8 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆41Updated 4 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.☆54Updated 5 years ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Updated 8 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated last month
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆26Updated 5 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆124Updated 2 years ago
- Python biomart API☆61Updated last year
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆62Updated 8 years ago
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆68Updated last year
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆104Updated last year
- Quality control methods for human genomic variants.☆62Updated 2 years ago
- Software for exploration of gene expression data from single-cell RNA sequencing.☆28Updated 5 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆32Updated 7 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆44Updated 7 years ago
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆86Updated 6 years ago
- Normalization for single cell RNA-seq data☆47Updated last year
- ☆103Updated this week
- ☆36Updated 7 years ago
- MyVariant.info: A BioThings API for human variant annotations☆87Updated last week
- python access to UCSC genomes database☆134Updated 4 years ago