Scripts and reference files to type Group A Streptococcus
☆11Aug 31, 2026Updated last month
Alternatives and similar repositories for GAS_Scripts_Reference
Users that are interested in GAS_Scripts_Reference are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- emm Automatic Isolate Labeller☆16Mar 25, 2025Updated last year
- Bacterial surveillance pipeline.☆30Sep 30, 2026Updated last week
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 3 years ago
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆96Jul 23, 2026Updated 2 months ago
- ☆23Sep 22, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequ…☆23Sep 23, 2026Updated 2 weeks ago
- Viral (meta)-genome assembly pipeline.☆24Sep 8, 2026Updated last month
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Sep 25, 2026Updated 2 weeks ago
- QC cutoffs for different genomes.☆19May 28, 2026Updated 4 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Jun 12, 2026Updated 3 months ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆36Oct 3, 2026Updated last week
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 4 months ago
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 2 months ago
- UPHL's Reference Free Pipeline☆29Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Static website for the PH4AGE alliance☆14Oct 27, 2023Updated 2 years ago
- Software for the Tree-Based Scan Statistic☆17Sep 30, 2026Updated last week
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated 2 years ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆44Updated this week
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆21Updated this week
- Assembly of Nanopore Sequencing☆17Updated this week
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- Sketch-based surveillance platform☆13Oct 1, 2026Updated last week
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆70Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- TaxTriage is a Nextflow workflow designed to agnostically identify and give confidences of microbial organisms within short- or long-read…☆82Oct 2, 2026Updated last week
- Standard database for the TBProfiler tool☆31Jun 23, 2026Updated 3 months ago
- app to collapse Pango lineages for reporting☆13Oct 2, 2026Updated last week
- ☆16Mar 12, 2026Updated 6 months ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- A user-friendly tool to screen antimicrobial resistance in fungal genomes☆21May 8, 2026Updated 5 months ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆15Jun 14, 2022Updated 4 years ago
- Influenza data pipeline to automate genotyping assignment☆45Sep 10, 2026Updated 3 weeks ago
- Repo for PrimerSchemes☆20Sep 14, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code Safety Inspection Service☆20Sep 23, 2022Updated 4 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 8 months ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 10 months ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Sep 28, 2026Updated last week
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 11 months ago
- Bioinformatics Pipeline and Visualization resources☆68Aug 30, 2024Updated 2 years ago
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆61Mar 23, 2023Updated 3 years ago