Data associated with the timeline of events during the 2024 H5N1 outbreak in the United States
☆27Jul 17, 2024Updated last year
Alternatives and similar repositories for H5N1_US2024_timeline
Users that are interested in H5N1_US2024_timeline are comparing it to the libraries listed below
Sorting:
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆20Updated this week
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆37Updated this week
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Dec 9, 2023Updated 2 years ago
- Consensus sequences for each Pango lineage☆23Jun 27, 2025Updated 8 months ago
- Projects on COVID-19 topic of genomic sequencing - mostly DataViz☆58Updated this week
- ☆29Jul 9, 2025Updated 8 months ago
- Pipeline to calculate icSHAPE score in genome with sliding window strategy☆12Aug 23, 2022Updated 3 years ago
- ☆44Aug 19, 2025Updated 6 months ago
- Covid-19 epidemiology - data and analysis☆11Dec 7, 2023Updated 2 years ago
- Basic watch face for Garmin watch☆10Feb 23, 2018Updated 8 years ago
- Informal summaries of notable SARS-CoV-2 lineages☆111Aug 22, 2025Updated 6 months ago
- Analyses of Ebola virus disease outbreaks☆10Jun 14, 2018Updated 7 years ago
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated last month
- A centralized repository for network analysis tools.☆11Dec 16, 2019Updated 6 years ago
- Bitpacked sequence trait and implementation☆16Feb 27, 2026Updated last week
- Curated datasets on reported cases of the SARS-CoV-2 Omicron (B.1.1.529) Variant of Concern☆10Jan 25, 2022Updated 4 years ago
- Materials from the Integrating R with ArcGIS Webinar series.☆11Mar 29, 2016Updated 9 years ago
- ☆12Oct 11, 2022Updated 3 years ago
- Introduction to R for Clinicians for the R/Medicine 2020 Virtual Conference☆11May 7, 2021Updated 4 years ago
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 5 months ago
- Bayesian modelling of bipartite networks☆13Jan 22, 2025Updated last year
- C++ implementation of a MCMC sampler for the (canonical) SBM☆11Oct 21, 2019Updated 6 years ago
- Workshop 6 - Generalized linear models (GLM)☆13Sep 3, 2024Updated last year
- Variational Inference for Multiply-Reported social network data https://doi.org/10.1093/jrsssa/qnac004☆13Jun 2, 2024Updated last year
- R package for Bayesian multi-state modelling of chronic disease burden data☆10Oct 30, 2023Updated 2 years ago
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆51Updated this week
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated last year
- My attempt at participating in some mutant form of Tidy Tuesday.☆12Dec 9, 2019Updated 6 years ago
- Source code, data, analysis code of experiment for the paper "Force-directed graph layouts revisited: a new force based on the t-Distribu…☆12Dec 15, 2022Updated 3 years ago
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated 5 months ago
- Scripts for estimating and visualizing epidemiological modeling of an epidemic (developed for COVID-19)☆13May 28, 2021Updated 4 years ago
- Dynamic programming algorithms for exact linear clustering in networks.☆16Jul 4, 2023Updated 2 years ago
- Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.☆13Aug 11, 2022Updated 3 years ago
- Materials for the OpenGeoHub Summer School 2022 tutorial☆13Dec 5, 2022Updated 3 years ago
- Repo for Paris 2019☆13Mar 4, 2019Updated 7 years ago
- Bayesian inference of effective contagion models from population level data, with STAN☆14Nov 9, 2020Updated 5 years ago
- Course on nowcasting and forecasting of infectious disease dynamics☆23Mar 2, 2026Updated last week
- Repository for Host-Pathogen Phylogeny Project. Paper DOI: 10.1038/nature22975☆15May 7, 2020Updated 5 years ago