Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
☆11Mar 25, 2026Updated 6 months ago
Alternatives and similar repositories for pyopal
Users that are interested in pyopal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Just another minhash implementation.☆13Sep 14, 2026Updated last month
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆25Mar 7, 2026Updated 7 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated last year
- A Rust library for parsing, writing and manipulating Genbank sequence files☆24Apr 20, 2025Updated last year
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Sep 1, 2026Updated last month
- Cython bindings and Python interface to Jess, a 3D template matching software for protein structures. Now 10x faster!☆12Aug 25, 2026Updated last month
- EnzyMM - Enzyme Motif Miner - Geometric matching of catalytic motifs in protein structures.☆46Aug 11, 2026Updated 2 months ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆64Mar 25, 2026Updated 6 months ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆46Mar 24, 2026Updated 6 months ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆15Updated this week
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 8 months ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Mar 25, 2026Updated 6 months ago
- Fasten toolkit, for streaming operations on fastq files☆85Updated this week
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆31Feb 3, 2026Updated 8 months ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated 2 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Multi-scale and multi-task benchmark for evaluating ML models for bacterial genomics across the bacterial tree of life.☆23Jul 27, 2026Updated 2 months ago
- An ultra-fast and accurate tool for KEGG Orthology (KO) assignment, powered by deep learning.☆24Aug 24, 2026Updated last month
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆16Sep 16, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Nail is an Alignment Inference tooL☆71Updated this week
- download isfinder database☆13Nov 9, 2018Updated 7 years ago
- Calculation of euclidean distance between vectors, with SIMD☆13Jan 17, 2024Updated 2 years ago
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆29Jun 14, 2026Updated 4 months ago
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Aug 12, 2026Updated 2 months ago
- SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)☆41Jan 12, 2024Updated 2 years ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆36Apr 16, 2024Updated 2 years ago
- A package for Unicode-friendly string compression using Unishox2☆24Nov 5, 2022Updated 3 years ago
- Query sequence database by HMMs arranged in predefined synteny structure☆21Jun 23, 2026Updated 3 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated last year
- Clustering tool optimized for sparse distance matrices: ~16M elements with ~190M connections clustered in minutes.☆16Sep 12, 2026Updated last month
- ☆11Sep 7, 2023Updated 3 years ago
- ☆18Oct 11, 2026Updated last week
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named S…☆17Jul 20, 2026Updated 2 months ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago