Deep learning embedding for nucleotide sequences
☆20Mar 12, 2026Updated 4 months ago
Alternatives and similar repositories for ntEmbd
Users that are interested in ntEmbd are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Estimating k-mer coverage histogram of genomics data☆79Mar 13, 2026Updated 4 months ago
- Construct a Physical Map from Linked Reads☆19Apr 1, 2026Updated 4 months ago
- Components of genome sequence assembly tools☆21Mar 30, 2022Updated 4 years ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Oct 4, 2021Updated 4 years ago
- ☆12Oct 7, 2020Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆22Sep 17, 2018Updated 7 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- Multistrand nucleic acid kinetic simulator☆23Oct 28, 2025Updated 9 months ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- ☆13Feb 20, 2024Updated 2 years ago
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Jul 18, 2026Updated 3 weeks ago
- ☆11Jun 13, 2024Updated 2 years ago
- ☆17Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- k-mer-based non-Bayesian Taxonomic Classifier☆20May 28, 2026Updated 2 months ago
- Finding putative exons and constructing splicegraphs using Trans-ABySS contigs☆11Nov 8, 2018Updated 7 years ago
- ☆15May 29, 2024Updated 2 years ago
- A SIMD-accelerated library to compute random minimizers☆46Jul 7, 2026Updated last month
- Implementation of Force2Vec method for ICDM 2020 paper titled "Force2Vec: Parallel force-directed graph embedding"☆14May 30, 2022Updated 4 years ago
- De novo clustering of long transcript reads into genes☆24Dec 15, 2025Updated 7 months ago
- ☆17May 22, 2025Updated last year
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated 5 months ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆20Jun 23, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for computing the coding potential of RNA transcript sequences using deep learning classification model☆57Oct 11, 2022Updated 3 years ago
- Script for parsing SAM/BAM files for coverage statistics☆16Jun 13, 2023Updated 3 years ago
- 📚Bioinformatics Technology Lab common code library☆29Apr 30, 2026Updated 3 months ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Human Protein Atlas image classification competition☆13May 22, 2023Updated 3 years ago
- reference-free transcriptome assembly for short and long reads☆110Mar 13, 2026Updated 4 months ago
- ☆16Aug 3, 2018Updated 8 years ago
- Fast hash function for DNA/RNA sequences☆111Aug 3, 2026Updated last week
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆26Jul 18, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆39Nov 19, 2024Updated last year
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Nov 13, 2025Updated 8 months ago
- ☆10Jan 19, 2019Updated 7 years ago
- Genomic sequence aligner☆33May 29, 2026Updated 2 months ago
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆15Updated this week