EnzyMM - Enzyme Motif Miner - Geometric matching of catalytic motifs in protein structures.
☆45Aug 11, 2026Updated 2 months ago
Alternatives and similar repositories for enzymm
Users that are interested in enzymm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein Annotation by Residue-Specific Enrichment: a site-based statistical method for interpretable protein function annotation☆16Jun 16, 2025Updated last year
- A lightweight, fast pocket finder in Python.☆94Jul 22, 2026Updated 2 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆218Sep 18, 2026Updated 3 weeks ago
- Just another minhash implementation.☆13Sep 14, 2026Updated 3 weeks ago
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆48Jun 17, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Terminal viewer for pdb files☆22Jan 5, 2026Updated 9 months ago
- Code for the paper "Learning to engineer protein flexibility".☆22Mar 24, 2026Updated 6 months ago
- Repository for the usage of Squidly.☆15Sep 3, 2026Updated last month
- ☆11Oct 21, 2022Updated 3 years ago
- ☆15Jul 14, 2025Updated last year
- ☆11Apr 25, 2026Updated 5 months ago
- An ultra-fast and accurate tool for KEGG Orthology (KO) assignment, powered by deep learning.☆24Aug 24, 2026Updated last month
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated last year
- Highly accurate discovery of terpene synthases powered by machine learning☆18Sep 15, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Python package to atom map, correct and suggest enzymatic reactions☆46Apr 11, 2024Updated 2 years ago
- Fast protein domain structure embedding+search tool☆31Sep 21, 2025Updated last year
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆45Jun 28, 2021Updated 5 years ago
- ☆15Jul 4, 2023Updated 3 years ago
- Representation learning for protein functional site analysis☆17Aug 11, 2023Updated 3 years ago
- Reaction-Conditioned Virtual Screening of Enzymes☆50Jun 13, 2026Updated 3 months ago
- ☆25Feb 11, 2026Updated 8 months ago
- A Rust library for parsing, writing and manipulating Genbank sequence files☆24Apr 20, 2025Updated last year
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆25Aug 19, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆33Apr 16, 2026Updated 5 months ago
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆34Jun 10, 2026Updated 4 months ago
- Multi-scale and multi-task benchmark for evaluating ML models for bacterial genomics across the bacterial tree of life.☆23Jul 27, 2026Updated 2 months ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆42Jun 8, 2023Updated 3 years ago
- A toolkit for enzyme discovery☆29May 18, 2026Updated 4 months ago
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 10 months ago
- Query sequence database by HMMs arranged in predefined synteny structure☆21Jun 23, 2026Updated 3 months ago
- PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion☆13Jul 4, 2024Updated 2 years ago
- Protein Engineering via Exploration of an Energy Landscape☆148Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆33Jun 25, 2026Updated 3 months ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆25Mar 7, 2026Updated 7 months ago
- ProteomeLM: A proteome-scale language model allowing fast prediction of protein-protein interactions and gene essentiality across taxa☆39Oct 1, 2026Updated last week
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆88Sep 9, 2026Updated last month
- Potts model-based protein sequence design☆117Jul 1, 2026Updated 3 months ago
- One protein is all you need (ICLR 2026)☆117Aug 1, 2026Updated 2 months ago
- A deep learning-based predictor of enzyme optimal pH☆12Jun 25, 2025Updated last year