Automated quality control for genomic machine learning datasets: scores the biases, duplicates and data leakage a classifier could exploit before you train on it.
β14Oct 10, 2026Updated 3 weeks ago
Alternatives and similar repositories for genomic-benchmarks-qc
Users that are interested in genomic-benchmarks-qc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Homology-based ANI estimation at unprecedented scalesπ¦β25Oct 4, 2026Updated 3 weeks ago
- Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.β11Mar 25, 2026Updated 7 months ago
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression modelsβ26Jun 8, 2026Updated 4 months ago
- Cython bindings and Python interface to Jess, a 3D template matching software for protein structures. Now 10x faster!β12Aug 25, 2026Updated 2 months ago
- A Rust library for parsing, writing and manipulating Genbank sequence filesβ24Apr 20, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Query sequence database by HMMs arranged in predefined synteny structureβ21Jun 23, 2026Updated 4 months ago
- EnzyMM - Enzyme Motif Miner - Geometric matching of catalytic motifs in protein structures.β47Aug 11, 2026Updated 2 months ago
- Build protein families from sequence clusters by iterative HMM search over very large databases β streaming, deterministic, pyHMMER-basedβ¦β12Sep 28, 2026Updated last month
- Microbial Culture Media Knowledge Graph - Comprehensive collection of 10,000+ culture media recipes from major international repositoriesβ¦β12Updated this week
- Just another minhash implementation.β13Oct 23, 2026Updated last week
- Repository to track changes in MIBiG curation data stored in JSON formatβ11Mar 18, 2024Updated 2 years ago
- Multi-scale and multi-task benchmark for evaluating ML models for bacterial genomics across the bacterial tree of life.β23Jul 27, 2026Updated 3 months ago
- The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of β¦β22Oct 7, 2026Updated 3 weeks ago
- A Python interface to the Ensembl REST APIs, biological data at your fingertips.β11Apr 17, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- β11Jan 11, 2021Updated 5 years ago
- Compressor of multiple sequence alignments dataβ10May 19, 2022Updated 4 years ago
- Plugin that provides pairing functions to the Polars libraryβ14Oct 14, 2026Updated 2 weeks ago
- A Python interface to gb-io, a fast GenBank parser written in Rust.β25May 21, 2026Updated 5 months ago
- Python library for identification and masking of low-complexity regions in nucleotide sequencesβ15Oct 14, 2026Updated 2 weeks ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.β25Mar 7, 2026Updated 7 months ago
- An ultra-fast and accurate tool for KEGG Orthology (KO) assignment, powered by deep learning.β25Oct 26, 2026Updated last week
- β14Dec 26, 2025Updated 10 months ago
- Python wrapper for LSD line segment detectorβ14Sep 12, 2014Updated 12 years ago
- Simple, predictable pricing with DigitalOcean hosting β’ AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- C++ rewrite from MATLAB source code of "A Contrario Horizon-First Vanishing Point Detection Using Second-Order Grouping Laws"β12Aug 7, 2019Updated 7 years ago
- It discovers linear dependent columns and then replaces linear dependent columns with linearly independent columns that span the space oβ¦β16Jul 4, 2024Updated 2 years ago
- Rust library for processing sequencing reads.β25Sep 2, 2024Updated 2 years ago
- Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).β11Aug 2, 2026Updated 3 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.β29Jul 21, 2025Updated last year
- β18Updated this week
- YUD+: Additional Vanishing Point Labels for YUDβ14Jan 24, 2024Updated 2 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictorsβ28Feb 12, 2026Updated 8 months ago
- Space mission design, optimization, and navigationβ14Jan 11, 2016Updated 10 years ago
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Real-time structure motif searching in protein 3D structures using an inverted index strategyβ16Sep 13, 2026Updated last month
- Python type stubs for the sortedcontainers package.β22Apr 23, 2025Updated last year
- Template and examples for using Gosling.js and its API in React Appβ11Jun 26, 2025Updated last year
- Targeted Detection and Reconstruction of Plasmidsβ22May 7, 2024Updated 2 years ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMERβ23Aug 17, 2026Updated 2 months ago
- Terminal viewer for pdb filesβ22Jan 5, 2026Updated 9 months ago
- GEne Cluster prediction with COnditional random fields.β90Jul 29, 2026Updated 3 months ago