grisu48 / gridengine

Related projects ⓘ

Alternatives and complementary repositories for gridengine

• shenwei356 / easy_qsub
  Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.
  ☆28Updated last year
• gawbul / docker-sge
  Dockerfile to build a container with SGE installed
  ☆24Updated 8 years ago
• PacificBiosciences / FALCON-integrate
  Mostly deprecated. See https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
  ☆31Updated 6 years ago
• sanger-pathogens / companion
  This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
  ☆21Updated 3 years ago
• intel / workflow-profiler
  ☆20Updated 9 years ago
• arq5x / filo
  Useful FILe and stream Operations
  ☆44Updated 8 years ago
• HpcGridRunner / HpcGridRunner
  source code for HpcGridRunner
  ☆17Updated 3 years ago
• opencb / hpg-aligner
  HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
  ☆34Updated 7 years ago
• lh3 / asub
  A unified array job submitter for LSF, SGE/UGE and Slurm
  ☆32Updated last month
• KnowEnG / TeachEnG
  A Teaching Engine for Genomics
  ☆11Updated 3 years ago
• desmid / mview
  MView extracts and reformats the results of a sequence database search or multiple alignment.
  ☆29Updated 2 months ago
• stamatak / ExaML
  Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI
  ☆49Updated 4 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆84Updated 6 years ago
• falconcomputing / falcon-genome
  Falcon Accelerated Genomics Pipelines
  ☆15Updated 5 years ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated 2 years ago
• kojix2 / ruby-minimap2
  Powerful long read aligner for Ruby
  ☆14Updated 7 months ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆58Updated 6 years ago
• cbcrg / piper-nf
  RNA mapping pipeline
  ☆18Updated 6 years ago
• OpenGene / defq
  Please switch to https://github.com/OpenGene/defastq
  ☆29Updated 6 years ago
• natefoo / slurm-drmaa
  DRMAA for Slurm: Implementation of the DRMAA C bindings for Slurm
  ☆49Updated last month
• sequencing / NxTrim
  Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
  ☆54Updated 6 years ago
• bxlab / hifive
  Tools for handling HiC and 5C data
  ☆23Updated 9 months ago
• vgteam / gssw
  efficient alignment of strings to partially ordered string graphs
  ☆33Updated 2 years ago
• wangkaisine / SGE-On-CentOS
  Intro how to install and use SGE(Sun Grid Engine) on ConteOS 7
  ☆19Updated 6 years ago
• NIH-HPC / singularity-examples
  example singularity definition files and demos
  ☆27Updated 6 years ago
• will-rowe / hulk
  Histosketching Using Little Kmers
  ☆55Updated last year
• Intel-HLS / BIGstack
  ☆12Updated last month
• pachterlab / kallisto_paper_analysis
  Analysis from kallisto paper
  ☆32Updated 8 years ago
• peterjc / picobio
  Miscellaneous Bioinformatics scripts etc mostly in Python
  ☆45Updated 2 weeks ago