☆12Aug 17, 2024Updated 2 years ago
Alternatives and similar repositories for ConsensuSV-ONT-pipeline
Users that are interested in ConsensuSV-ONT-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 7 months ago
- Tools for working with agp files☆20Jun 26, 2025Updated last year
- ☆20Nov 17, 2025Updated 11 months ago
- Error correction of long reads☆16Jan 30, 2026Updated 8 months ago
- ☆13May 27, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 11 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated last year
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆32Nov 25, 2024Updated last year
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 4 months ago
- Topsicle utilizes abundance of telomere pattern k-mers to estimate telomere length in long read.☆22Mar 2, 2026Updated 7 months ago
- ☆13Dec 10, 2025Updated 10 months ago
- Gene copy number prediction from k-mer frequencies☆18Apr 15, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- que paquete☆10Jul 17, 2024Updated 2 years ago
- An R package for performing MultiSTAAR procedure in whole-genome sequencing studies☆12Nov 14, 2024Updated last year
- Pangenome file formats based on SQLite☆16Updated this week
- somatic SV calling on matched tumor-normal co-assembly graphs☆23Aug 1, 2024Updated 2 years ago
- PHasing Reads in Areas Of Homozygosity☆14Feb 12, 2025Updated last year
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated last year
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆12Sep 28, 2026Updated 2 weeks ago
- WDL workflows for variant calling and assembly using ONT☆40Oct 8, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Python library for manipulation of CIGAR, MSA, and other alignment formats.☆12Apr 14, 2026Updated 6 months ago
- Regenotyping structural variants through an accurate and efficient force-calling method☆26Apr 17, 2026Updated 6 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 8 months ago
- Kmer Analysis of Pileups for Genotyping☆43Jul 16, 2026Updated 3 months ago
- ☆33Jul 13, 2026Updated 3 months ago
- ☆23Sep 22, 2026Updated 3 weeks ago
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 3 years ago
- A pipeline creation tool using Snakemake☆14Updated this week
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python package for comparing genome assemblies and read data to the diploid Q100 benchmark☆21Oct 8, 2026Updated last week
- quickly filter fastq files by matching sequences to a set of regex patterns☆60Apr 18, 2026Updated 6 months ago
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆97Aug 2, 2026Updated 2 months ago
- A command-line interface for Sentieon pipelines☆17Updated this week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated last year
- adaptive genome assembly using nanopore sequencing☆27Sep 11, 2026Updated last month
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆47Jul 1, 2026Updated 3 months ago