Zhaocy-Research / TransformerSTLinks
A Transformer Model Exploiting Histology Images and Spatial Gene Expression
☆20Updated 3 months ago
Alternatives and similar repositories for TransformerST
Users that are interested in TransformerST are comparing it to the libraries listed below
Sorting:
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆79Updated 8 months ago
- Her2 Breast Cancer Project☆84Updated 2 years ago
- ☆71Updated last month
- ☆44Updated 3 years ago
- PyTorch implementation of HisToGene☆42Updated 3 years ago
- ☆135Updated 6 months ago
- Deep learning on histopathology images.☆125Updated 3 years ago
- Identify spatial domain☆77Updated last month
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆57Updated last year
- Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"☆10Updated 2 months ago
- ☆37Updated 3 months ago
- ☆55Updated 2 years ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆29Updated 3 months ago
- Code for the THItoGene☆24Updated 3 months ago
- ☆39Updated last year
- Code for ST_IGI package☆28Updated this week
- domain adaptation of spatial and single-cell transcriptome☆27Updated 9 months ago
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆27Updated last year
- ☆103Updated 5 months ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆64Updated last year
- ☆60Updated 8 months ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆41Updated last month
- ☆70Updated 2 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆66Updated last year
- ☆13Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- stMCDI: Masked Conditional Diffusion Model with Graph Neural Network for Spatial Transcriptomics Data Imputation☆9Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆94Updated 3 months ago
- ☆10Updated 5 months ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆17Updated last year