LucasESBS / vegaLinks
VEGA: VAE Enhanced by Gene Annotations
☆16Updated 3 years ago
Alternatives and similar repositories for vega
Users that are interested in vega are comparing it to the libraries listed below
Sorting:
- ☆45Updated 2 years ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆42Updated last year
- Single cell joint embedding and modality prediction with autoencoder☆9Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆75Updated 5 months ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆26Updated 2 years ago
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆11Updated 2 years ago
- repository containing analysis scripts and auxiliary files☆34Updated 5 years ago
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆12Updated 4 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆17Updated 3 years ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 4 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- ☆48Updated 6 years ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30Updated last month
- CeSpGRN: Inferring cell specific GRN using single-cell gene expression data☆21Updated last year
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆19Updated 3 years ago
- ☆28Updated 4 years ago
- ☆59Updated 9 months ago
- ☆29Updated 3 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆19Updated last year
- ☆16Updated 3 years ago
- spatial transcriptome, single cell☆68Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 5 months ago
- ☆54Updated last month
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆111Updated last year
- Python client for the OmniPath web service☆45Updated last month
- SIMBA: SIngle-cell eMBedding Along with features☆63Updated 8 months ago
- ☆31Updated 2 months ago