Predicting small molecule and RNA target interactions using deep neural networks (Nature Biotechnology, 2026)
☆63Jan 5, 2026Updated 8 months ago
Alternatives and similar repositories for SMRTnet
Users that are interested in SMRTnet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🧪 Optimized protocol for m6A-SAC-seq☆13Jun 16, 2025Updated last year
- ✂️ Trim sequencing adapters from NGS data automatically☆14Updated this week
- Rapid structure-based virtual screening for RNA targets.☆30Aug 15, 2026Updated 3 weeks ago
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆41Aug 29, 2026Updated last week
- Predicting RNA 3D structure and conformers using a pre-trained secondary structure model and structure-aware attention☆39Apr 21, 2026Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Aug 13, 2026Updated 3 weeks ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆70Mar 3, 2024Updated 2 years ago
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆48Aug 5, 2025Updated last year
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Mar 24, 2021Updated 5 years ago
- ☆14Jan 18, 2024Updated 2 years ago
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.☆18May 6, 2025Updated last year
- Primary RNA sequence model☆42May 20, 2024Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆70May 8, 2026Updated 3 months ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆18Feb 10, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Sep 6, 2022Updated 4 years ago
- BPfold: Deep generalizable prediction of RNA secondary structure via base pair motif energy.☆35May 27, 2026Updated 3 months ago
- ☆79Apr 22, 2025Updated last year
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nat…☆19Feb 5, 2023Updated 3 years ago
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- Code repository for paper "Generative artificial intelligence GPT-4 accelerates knowledge mining and machine learning for synthetic biolo…☆13May 14, 2023Updated 3 years ago
- GerNA-Bind: Geometric-enhanced RNA-ligand Binding Specificity Prediction with Deep Learning☆31Dec 15, 2025Updated 8 months ago
- A Foundation Language Model For Multilayer Regulation of RNA☆22Nov 30, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)☆16Nov 28, 2023Updated 2 years ago
- ☆69Jul 15, 2026Updated last month
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆14Aug 22, 2026Updated 2 weeks ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆27Dec 3, 2024Updated last year
- Base pair-augmented SE(3)-flow matching for conditional RNA 3D structure generation☆27Aug 8, 2026Updated last month
- a deep learning architecture for RNA-ligand binding sites prediction☆18Jan 21, 2024Updated 2 years ago
- Nature Methods: RNA foundation model (together with RhoFold)☆389May 27, 2025Updated last year
- Knowledge-Guided Diffusion Model for 3D Ligand-Pharmacophore Mapping☆51Updated this week
- ☆17Feb 3, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Nov 11, 2022Updated 3 years ago
- ☆42Sep 29, 2022Updated 3 years ago
- Program to find drug-like RNA-ligand binding pockets.☆25May 26, 2026Updated 3 months ago
- A flow matching model for generating conformational ensembles of protein backbones.☆50May 22, 2026Updated 3 months ago
- Base-conversion Sequencing Aligner☆14Nov 8, 2025Updated 10 months ago
- [G]enomic [P]ositioning with [Py]thon☆15Jun 19, 2026Updated 2 months ago
- ☆19Mar 21, 2024Updated 2 years ago