Predicting small molecule and RNA target interactions using deep neural networks (Nature Biotechnology, 2026)
β69Jan 5, 2026Updated 10 months ago
Alternatives and similar repositories for SMRTnet
Users that are interested in SMRTnet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- π§ͺ Optimized protocol for m6A-SAC-seqβ13Jun 16, 2025Updated last year
- Rapid structure-based virtual screening for RNA targets.β31Aug 15, 2026Updated 2 months ago
- β12Jul 10, 2025Updated last year
- A pipeline for processing single-cell and spatial long-read transcriptomic dataβ13Oct 28, 2026Updated last week
- GerNA-Bind: Geometric-enhanced RNA-ligand Binding Specificity Prediction with Deep Learningβ33Dec 15, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An analysis of a new experimentally-derived nucleic acid binding chemical libraryβ35Jan 27, 2023Updated 3 years ago
- βοΈ Trim sequencing adapters from NGS data automaticallyβ14Oct 12, 2026Updated 3 weeks ago
- Base pair-augmented SE(3)-flow matching for conditional RNA 3D structure generationβ32Aug 8, 2026Updated 3 months ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utilsβ¦β27Dec 3, 2024Updated last year
- β71Oct 8, 2026Updated 3 weeks ago
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inferenceβ67Aug 29, 2026Updated 2 months ago
- Predicting RNA 3D structure and conformers using a pre-trained secondary structure model and structure-aware attentionβ42Oct 16, 2026Updated 3 weeks ago
- A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysisβ10Nov 6, 2023Updated 3 years ago
- β18Jun 6, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ExplainBind: Explainable Physicochemical Determinants of ProteinβLigand Binding via Non-Covalent Interactionsβ14Mar 6, 2026Updated 8 months ago
- code and source data for de novo design of Kemp elimination paperβ27Sep 18, 2025Updated last year
- Program to find drug-like RNA-ligand binding pockets.β25May 26, 2026Updated 5 months ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptomeβ10Jan 25, 2019Updated 7 years ago
- A dataset for training and benchmarking deep learning models for RNA structure predictionβ72May 8, 2026Updated 5 months ago
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"β49Aug 5, 2025Updated last year
- Bioinformatic tool for Splice site Strength Estimation using RNA-seqβ22Aug 13, 2026Updated 2 months ago
- Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.β35Jun 3, 2022Updated 4 years ago
- Code repository of "Deep generative design of RNA family sequences"β44Apr 8, 2026Updated 6 months ago
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"β16Mar 24, 2021Updated 5 years ago
- (ICML 2026) Official code repository for Protein Circuit Tracing via Cross-layer Transcodersβ15May 14, 2026Updated 5 months ago
- CryoACEβ13Jul 22, 2026Updated 3 months ago
- β14Jan 18, 2024Updated 2 years ago
- β14Apr 16, 2026Updated 6 months ago
- Strain-level metagenomic classification with Metagenome Assembly driven Database Reduction approachβ12Oct 27, 2026Updated last week
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.β19May 6, 2025Updated last year
- β39Nov 23, 2025Updated 11 months ago
- β79Apr 22, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- β12Nov 20, 2025Updated 11 months ago
- Primary RNA sequence modelβ42May 20, 2024Updated 2 years ago
- β16Sep 6, 2022Updated 4 years ago
- BPfold: Deep generalizable prediction of RNA secondary structure via base pair motif energy.β37May 27, 2026Updated 5 months ago
- Official implementation of MotiL for molecular property prediction (Nature Communications)β15May 31, 2026Updated 5 months ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISHβ19Feb 10, 2023Updated 3 years ago
- "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Natβ¦β19Feb 5, 2023Updated 3 years ago