Predicting small molecule and RNA target interactions using deep neural networks (Nature Biotechnology, 2026)
☆55Jan 5, 2026Updated 3 months ago
Alternatives and similar repositories for SMRTnet
Users that are interested in SMRTnet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Mar 24, 2021Updated 5 years ago
- DMFF-DTA: Dual Modality Feature Fused Neural Network Integrating Binding Site Information for Drug Target Affinity Prediction☆20Feb 18, 2025Updated last year
- ☆12May 12, 2025Updated 11 months ago
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆13Feb 1, 2021Updated 5 years ago
- Structure-aware PRotein ligand INTeraction (SPRINT) is a ultrafast deep learning framework for drug-target interaction prediction.☆16Feb 19, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- RiboNucleic Acid (RNA) Language Model☆161Oct 3, 2025Updated 6 months ago
- ☆16Dec 18, 2024Updated last year
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆51Mar 20, 2024Updated 2 years ago
- Metagenomics Taxonomic Reads Assembly Single-Species☆16May 25, 2023Updated 2 years ago
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆37Jul 4, 2025Updated 9 months ago
- Using DCGAN, WGAN & WGAN-GP in Augmentation of EEG data for BCIs☆14Jan 5, 2022Updated 4 years ago
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- ☆58Aug 28, 2024Updated last year
- [BIBM'25] DPASyn: Mechanism-Aware Drug Synergy Prediction via Dual Attention and Precision-Aware Quantization☆29Feb 23, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- to assess structural quality of RNA using 3D CNN☆14Aug 17, 2018Updated 7 years ago
- Dock Multiple Ligands with AutoDock Vina with one Command☆11Jan 10, 2018Updated 8 years ago
- ☆30Oct 20, 2023Updated 2 years ago
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 2 years ago
- barcode demultiplexing☆22Jun 4, 2019Updated 6 years ago
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.☆17May 6, 2025Updated 11 months ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago
- Run AlphaFold2 (and multimer) step by step☆39Apr 23, 2022Updated 3 years ago
- ☆13Oct 19, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code for 5UTR project☆26May 20, 2023Updated 2 years ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆83Mar 6, 2026Updated last month
- deep structural disentanglement☆42Apr 7, 2026Updated last week
- Improved ab initio protein structure reconstruction☆15Mar 7, 2018Updated 8 years ago
- HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy☆18Apr 20, 2023Updated 2 years ago
- ☆15Feb 18, 2025Updated last year
- Predict binding affinity of ligand-protein complexes using Graph Neural Networks. The model is implemented using PyTorch Geometric and ba…☆11Nov 26, 2022Updated 3 years ago
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆10Apr 6, 2023Updated 3 years ago
- LAST: Latent Space Assisted Adaptive Sampling for Protein Trajectories☆13Dec 17, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆13May 27, 2025Updated 10 months ago
- Code repository of "Deep generative design of RNA family sequences"☆40Apr 8, 2026Updated last week
- The code for NeurIPS 2023 paper DSR☆14Oct 8, 2023Updated 2 years ago
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆24May 10, 2025Updated 11 months ago
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆20Feb 22, 2023Updated 3 years ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆26Feb 2, 2026Updated 2 months ago
- The Vini in silico model of cancer☆12Mar 7, 2026Updated last month