BPfold: Deep generalizable prediction of RNA secondary structure via base pair motif energy.
☆37May 27, 2026Updated 4 months ago
Alternatives and similar repositories for BPfold
Users that are interested in BPfold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆42Aug 29, 2026Updated 3 weeks ago
- DeepDubber-V1: Towards High Quality and Dialogue, Narration, Monologue Adaptive Movie Dubbing Via Multi-Modal Chain-of-Thoughts Reasoning…☆30Sep 7, 2025Updated last year
- ☆19May 14, 2025Updated last year
- ☆22Jan 9, 2026Updated 8 months ago
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆13Jan 2, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- [ICLR 2025] The offical implementation of "PSEC: Skill Expansion and Composition in Parameter Space", a new framework designed to facilit…☆67Feb 12, 2025Updated last year
- lncRNA-Py is a development package for applying machine learning and deep learning to the problem of lncRNA classification, i.e. predicti…☆12Jan 24, 2025Updated last year
- RNAGenesis: A Generalist Foundation Model for Functional RNA Therapeutics☆34Jun 28, 2026Updated 3 months ago
- ☆20Nov 27, 2025Updated 10 months ago
- [MICCAI 2023] (early accept) UOD: universal oneshot detection of anatomical landmarks. https://arxiv.org/abs/2306.07615☆12Jan 4, 2024Updated 2 years ago
- RNA Structural Covariation Above Phylogenetic Expectation☆25Updated this week
- Official repository for 'Risk of Bias in Chest Radiography Deep Learning Foundation Models'☆13Sep 27, 2023Updated 3 years ago
- [IEEE TPAMI 2025] Privacy-Preserving Biometric Verification With Handwritten Random Digit String☆71May 18, 2026Updated 4 months ago
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆65Aug 2, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python wrapper to unify reading/writing via NiBabel, pynrrd and SimpleITK within a unified and simple interface.☆18Apr 10, 2026Updated 5 months ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆163Mar 22, 2026Updated 6 months ago
- 🏆 Official implementation of LangCoop: Collaborative Driving with Natural Language☆81Sep 12, 2025Updated last year
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Oct 21, 2022Updated 3 years ago
- [ICCV 2025] Long-term Traffic Simulation with Interleaved Autoregressive Motion and Scenario Generation.☆55Aug 27, 2025Updated last year
- Nature Computational Science: RhoDesign is a structure-to-sequence model for RNA design.☆66Nov 8, 2024Updated last year
- Official Code for Paper: Beyond Matryoshka: Revisiting Sparse Coding for Adaptive Representation☆143May 6, 2026Updated 4 months ago
- Nature Methods: RNA foundation model (together with RhoFold)☆391May 27, 2025Updated last year
- Predicting RNA 3D structure and conformers using a pre-trained secondary structure model and structure-aware attention☆40Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆20May 20, 2025Updated last year
- Predicting small molecule and RNA target interactions using deep neural networks (Nature Biotechnology, 2026)☆65Jan 5, 2026Updated 8 months ago
- SHAPE-guided RNA structural homology search☆12Aug 12, 2025Updated last year
- [NeurIPS 2025] First SFT, Second RL, Third UPT: Continual Improving Multi-Modal LLM Reasoning via Unsupervised Post-Training☆89Oct 29, 2025Updated 10 months ago
- [🏆AAAI'25] Official Repo for ChemVLM: Exploring the Power of Multimodal Large Language Models in Chemistry Area.☆93Apr 14, 2026Updated 5 months ago
- The official implementation of "ECAMP: Entity-centered Context-aware Medical Vision Language Pre-training"☆48Jan 4, 2026Updated 8 months ago
- ☆17Apr 30, 2026Updated 4 months ago
- A Foundation Language Model For Multilayer Regulation of RNA☆22Nov 30, 2025Updated 9 months ago
- Workshop lesson material for the GNN and Transformers workshop☆19Apr 27, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Accelerate Molecular Biology Research with Machine Learning☆57Jul 24, 2026Updated 2 months ago
- [NeurIPS DB 2025] IR3D-Bench: Evaluating Vision-Language Model Scene Understanding as Agentic Inverse Rendering☆46Oct 15, 2025Updated 11 months ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆123Apr 7, 2024Updated 2 years ago
- [ICCV2025] SIMS: Simulating Stylized Human-Scene Interactions with Retrieval-Augmented Script Generation☆32Jul 25, 2025Updated last year
- [CVPR 2025] Noise-Consistent Siamese-Diffusion for Medical Image Synthesis and Segmentation☆89Nov 29, 2025Updated 9 months ago
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆60Oct 8, 2024Updated last year
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago