hartleys / QoRTsLinks
Quality of RNA-Seq Toolset
☆53Updated 6 years ago
Alternatives and similar repositories for QoRTs
Users that are interested in QoRTs are comparing it to the libraries listed below
Sorting:
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.☆57Updated last year
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 5 years ago
- ☆78Updated 11 years ago
- Collection of CGAT NGS Pipelines☆43Updated 7 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- ☆72Updated 2 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Fast fusion detection using kallisto☆79Updated 6 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- R package for bcbio RNA-seq analysis.☆63Updated last year
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- BISulfite-seq CUI Toolkit☆69Updated 2 months ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- Genomic Association Tester☆35Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- An awk-like VCF parser☆56Updated last year
- nucleosome calling using ATAC-seq☆109Updated 5 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 11 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Analysis pipeline for cancer sequencing data☆112Updated 8 months ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 7 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Updated 3 years ago
- Transcript quantification import for modular pipelines☆143Updated 3 months ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆92Updated last week