USTC-HIlab / DeepPhos
☆15Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for DeepPhos
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆11Updated last year
- MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep lea…☆47Updated 3 months ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆33Updated 2 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆34Updated 9 months ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 4 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆16Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆29Updated 2 years ago
- ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence☆14Updated 4 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆63Updated last year
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆9Updated 9 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆14Updated 2 weeks ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆47Updated 2 years ago
- A visualization software for antibody multi sequence alignment☆15Updated 5 months ago
- HLA-II ligand predictor.☆35Updated last year
- Predicting ncRNA-protein interaction using high-level features based on deep learning☆15Updated 4 years ago
- ☆38Updated 11 months ago
- 🧛 Deep generative models for TCR sequences 🧛☆16Updated 2 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆25Updated 7 years ago
- python based queries for the proteomesoflife neo4j network database☆13Updated 4 years ago
- ☆14Updated 3 years ago
- MS/MS prediction for peptides☆22Updated 3 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆77Updated 2 years ago
- DeepTTC: a transformer-based model for predicting cancer drug response☆15Updated last year
- CNN architecture for predicting DNA binding sites for Transcription Factors☆48Updated 5 years ago
- ☆56Updated 7 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆46Updated 7 months ago
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- identification of immunogenic neoepitopes☆12Updated last year
- Comparative evaluation of different methods for TCR clustering☆12Updated 6 years ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆80Updated 10 months ago