USTC-HIlab / DeepPhos
☆15Updated 6 years ago
Alternatives and similar repositories for DeepPhos:
Users that are interested in DeepPhos are comparing it to the libraries listed below
- MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep lea…☆48Updated 7 months ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆17Updated 2 years ago
- A visualization software for antibody multi sequence alignment☆18Updated 9 months ago
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆44Updated 5 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆39Updated last year
- HLA-II ligand predictor.☆42Updated last year
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆13Updated 4 years ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆15Updated last year
- Knowledge-primed neural networks☆35Updated 2 years ago
- DeepTTC: a transformer-based model for predicting cancer drug response☆15Updated last year
- Code for 5UTR project☆24Updated last year
- De novo peptide sequencing for DDA and DIA by deep learning☆32Updated 4 years ago
- Immunoglobulin and T-Cell receptor rearrangement software☆48Updated last year
- HLA-I ligand predictor☆35Updated 3 months ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Updated 2 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆32Updated 5 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆66Updated last year
- Deep learning model to predict degron sequences☆20Updated 2 years ago
- A Deep Learning based Efficacy Prediction System for drug discovery☆65Updated 2 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 4 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆25Updated 7 years ago
- ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence☆14Updated 4 years ago
- ☆22Updated 2 months ago
- Python package and command line tool for epitope prediction☆51Updated 7 months ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 2 years ago
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆10Updated 9 years ago
- ☆37Updated last year