SPatial Omics Oxford Analysis Pipeline
☆12Jul 26, 2024Updated 2 years ago
Alternatives and similar repositories for SpOOx
Users that are interested in SpOOx are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Count ratio uncertainty modeling base linear regression☆15Sep 23, 2026Updated 3 weeks ago
- cgat-flow repository☆16May 10, 2026Updated 5 months ago
- An R package for ECM molecule annotation, classification, and analysis☆14Sep 20, 2024Updated 2 years ago
- ☆12Jan 14, 2023Updated 3 years ago
- Multi-Dimensional Visualization (MDV) is an open-source toolkit for analyzing and visualizing spatial and molecular datasets. Code licens…☆42Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated 2 months ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- Segmentation error aware clustering for multiplexed imaging☆19Jan 9, 2025Updated last year
- A public MuSpAn page for community discussions and issue reporting.☆26Sep 2, 2026Updated last month
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆45May 9, 2026Updated 5 months ago
- Implementation of Christofides Algorithm in Python for TSP☆17Apr 18, 2024Updated 2 years ago
- Blood Transcription Modules for interpreting blood transcriptomics data☆11Nov 25, 2024Updated last year
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆29Sep 20, 2022Updated 4 years ago
- GSEA plots in ggplot2☆10Jan 21, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R package designed to demultiplex cell hashing data☆32Oct 10, 2026Updated last week
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated 7 months ago
- ☆14May 18, 2026Updated 5 months ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆37Jul 23, 2026Updated 2 months ago
- ☆15Jul 16, 2026Updated 3 months ago
- Links between modalities in mudata☆17Updated this week
- ☆40Jun 24, 2025Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Sep 23, 2025Updated last year
- Single cell proteomics data processing☆33Oct 2, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆14Oct 13, 2026Updated last week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- RIPPLE - Spatial transcriptomics analysis of a cell's influence on its neighbors' transcriptome☆41Sep 14, 2026Updated last month
- ☆31Updated this week
- MASC: Mixed-effects Association testing for Single Cells☆16Apr 16, 2021Updated 5 years ago
- Single-cell morphological analysis☆16Apr 23, 2026Updated 5 months ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Updated this week
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆47Jul 8, 2026Updated 3 months ago
- MultiModal Classifier Hierarchy (MMoCHi)☆13Oct 2, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Dataloader for common proteomics search engine outputs into AnnData format☆14Mar 25, 2026Updated 6 months ago
- Code and data repository for the 2020 physalia course on single cell RNA sequencing.☆59Apr 15, 2020Updated 6 years ago
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Oct 12, 2026Updated last week
- OMERO.web plugin for the Vitessce multimodal data viewer.☆14Jul 29, 2026Updated 2 months ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆19Sep 16, 2021Updated 5 years ago
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated 2 years ago
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 8 months ago