Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
☆49Aug 4, 2026Updated this week
Alternatives and similar repositories for Metagenomic-DeepFRI
Users that are interested in Metagenomic-DeepFRI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GEne Cluster prediction with COnditional random fields.☆86Jul 29, 2026Updated last week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆72Jul 16, 2026Updated 3 weeks ago
- Deep functional residue identification☆352Mar 24, 2023Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Jul 22, 2024Updated 2 years ago
- Compressing protein structures effectively with torsion angles☆195Aug 3, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆69Mar 16, 2026Updated 4 months ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆260May 13, 2026Updated 2 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆91Mar 12, 2026Updated 4 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Sep 28, 2025Updated 10 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Jul 30, 2026Updated last week
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 6 months ago
- ☆51Sep 25, 2024Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆55May 8, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Population genomics from metagenomes☆13Sep 1, 2024Updated last year
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Mar 3, 2023Updated 3 years ago
- Terminal viewer for pdb files☆22Jan 5, 2026Updated 7 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆26Nov 9, 2022Updated 3 years ago
- Code for "HyperTab: Hypernetwork Approach for Deep Learning on Small Tabular Datasets"☆16Feb 12, 2024Updated 2 years ago
- Scripts to generate and analyze afdb clusters☆11Sep 15, 2023Updated 2 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆315Feb 3, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Prediction of microbial interactions in complex communities☆14Aug 14, 2024Updated last year
- Convert PDB residues to their Uniprot equivalents☆17Mar 31, 2020Updated 6 years ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆112Oct 20, 2023Updated 2 years ago
- Find Co-Abundant Groups of Genes☆12Aug 3, 2020Updated 6 years ago
- t-distributed stochastic neighbor embedding for microbiota data☆13May 12, 2019Updated 7 years ago
- EnzyMM - Enzyme Motif Miner - Geometric matching of catalytic motifs in protein structures.☆41Jul 24, 2026Updated 2 weeks ago
- A Python Tool for Benchmarking Ontological Classification Methods☆54Jan 19, 2026Updated 6 months ago
- A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscr…☆15Apr 12, 2026Updated 3 months ago
- ☆57Aug 28, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- ☆63Jul 16, 2026Updated 3 weeks ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆20May 11, 2022Updated 4 years ago
- ☆16Updated this week
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆14Jan 28, 2025Updated last year
- Rank homologous protein sequences based on a regressor trained on experimental measures☆16Apr 11, 2025Updated last year
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆181Jul 22, 2026Updated 2 weeks ago