naumenko-sa / bioscripts
a bucket of bioinformatics scripts
☆13Updated this week
Alternatives and similar repositories for bioscripts:
Users that are interested in bioscripts are comparing it to the libraries listed below
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated last month
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Benchmarking of CNV calling tools☆18Updated 5 years ago
- ☆22Updated 4 months ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 10 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- Genomic Association Tester☆31Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 2 months ago
- R package for DNA methylation analysis☆18Updated 8 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- Third-generation fusion gene detection☆14Updated last year
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆17Updated 2 years ago
- ☆13Updated 5 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated 2 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago
- ☆18Updated 2 years ago
- Enabling differential allele-specific analysis☆11Updated 4 months ago