☆68Jun 16, 2026Updated 2 weeks ago
Alternatives and similar repositories for MegaFold
Users that are interested in MegaFold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆35Apr 29, 2025Updated last year
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆37Mar 22, 2026Updated 3 months ago
- MiniFold: Simple, Fast and Accurate Protein Structure Prediction☆91Jul 10, 2025Updated 11 months ago
- Flow-matching for coarse graining of miniproteins.☆20Nov 18, 2022Updated 3 years ago
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆14Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆13Nov 12, 2021Updated 4 years ago
- FoldBench is a low-homology benchmark spanning proteins, nucleic acids, ligands, and six major interaction types, enabling assessments th…☆135May 9, 2026Updated last month
- A Fast, Simplified Model for Molecular Generation with Improved Physical Quality☆28Oct 1, 2025Updated 9 months ago
- mBER - Manifold Binder Engineering and Refinement. mBER enables antibody binder design by leveraging structure templates and sequence con…☆136Apr 27, 2026Updated 2 months ago
- ☆32Jun 16, 2025Updated last year
- This is the official repository of GCP-VQVAE: A Geometry-Complete Language for Protein 3D Structure☆42May 9, 2026Updated last month
- A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dicti…☆80Jun 18, 2026Updated last week
- Code for AlphaFold Distillation for Protein Design☆28Sep 18, 2025Updated 9 months ago
- composite-objective protein design☆339Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated 3 months ago
- ☆91Feb 11, 2026Updated 4 months ago
- ☆21Aug 22, 2022Updated 3 years ago
- Python implementation of the TMscore program☆43Apr 29, 2024Updated 2 years ago
- A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)☆66Jun 20, 2022Updated 4 years ago
- Official repo of "Towards Interpretable Protein Structure Prediction with Sparse Autoencoders" published at ICLR 2025 GEM workshop.☆17Mar 13, 2025Updated last year
- mmCIF-based extension dictionary for computed structure models☆24Feb 5, 2026Updated 4 months ago
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆126Apr 23, 2026Updated 2 months ago
- Official implementation of paper: MolAE: Auto-Encoder Based Molecular Representation Learning With 3D Cloze Test Objective (icml 2024)☆12Jul 4, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The MULTICOM protein structure system. This repository includes the source code and documents of both template-based and template-free mo…☆17Nov 2, 2021Updated 4 years ago
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆1,974May 6, 2026Updated last month
- The central entry point to the P2Rank project with links to the individual projects, including references to documentation, datasets, etc…☆14Feb 11, 2026Updated 4 months ago
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆29Nov 20, 2025Updated 7 months ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆24Oct 31, 2025Updated 8 months ago
- Structural Quality Assessment for Biomolecular Structure Prediction Models☆97May 22, 2026Updated last month
- IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.☆224Jun 23, 2026Updated last week
- Massively-Parallel Natural Extension of Reference Frame☆34Jan 18, 2023Updated 3 years ago
- Python package for P2 (Path Planning), a masked diffusion model sampling method for sequence generation (protein, text, etc.).☆23Aug 19, 2025Updated 10 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- our in-house version of ProteinMPNN☆39Feb 12, 2026Updated 4 months ago
- Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (bui…☆376May 22, 2026Updated last month
- ☆104Jun 10, 2026Updated 2 weeks ago
- ☆24Nov 28, 2025Updated 7 months ago
- InteractionGraphNet: a Novel and Efficient Deep Graph Representation Learning Framework for Accurate Protein-Ligand Interaction Predictio…☆34Aug 9, 2021Updated 4 years ago
- Chai-1, SOTA model for biomolecular structure prediction☆1,956Apr 11, 2026Updated 2 months ago
- User friendly and accurate binder design pipeline☆1,145May 11, 2026Updated last month