Alternatives and similar repositories for MegaFold

Users that are interested in MegaFold are comparing it to the libraries listed below

• BEAM-Labs / FoldBench
  ☆38Updated last week
• IntelliGen-AI / IntelliFold
  IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.
  ☆138Updated last month
• amorehead / alphafold3-pytorch-lightning-hydra
  Implementation of AlphaFold 3 in PyTorch Lightning + Hydra
  ☆34Updated 11 months ago
• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆77Updated last year
• aqlaboratory / insilico_design_pipeline
  In-silico design pipeline for evaluating protein structure diffusion models.
  ☆27Updated last year
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆64Updated 3 months ago
• alexechu / protpardelle
  ☆65Updated last year
• escalante-bio / mosaic
  composite-objective protein design
  ☆88Updated this week
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆80Updated last week
• MattMcPartlon / AttnPacker
  Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"
  ☆86Updated last year
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆45Updated 9 months ago
• instadeepai / protein-structure-tokenizer
  Official implementation of "Learning the language of protein structures"
  ☆38Updated 2 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆83Updated 2 months ago
• divnori / rnaflow
  RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
  ☆67Updated last year
• AI4PDLab / ProtRL
  ☆84Updated last week
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆58Updated last year
• amyxlu / plaid
  All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
  ☆110Updated 3 months ago
• OpenBioML / protein-lm-scaling
  ☆58Updated last year
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆104Updated 3 weeks ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆80Updated last year
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆69Updated last year
• rish-16 / rna-backbone-design
  Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design
  ☆76Updated 2 months ago
• Profluent-AI / progen3
  Public Release of ProGen3 family of Models
  ☆81Updated last month
• RosettaCommons / atomworks
  A generalized computational framework for biomolecular modeling.
  ☆219Updated this week
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆134Updated 4 months ago
• levinthal / Pallatom
  ☆110Updated 3 months ago
• ngruver / NOS
  Protein Design with Guided Discrete Diffusion
  ☆133Updated last year
• luwei0917 / BindingGYM
  ☆28Updated last month
• KatarinaYuan / StructTokenBench
  A benchmark for comprehensive evaluation on protein structure tokenization methods
  ☆31Updated last month