Alternatives and similar repositories for FoldBench

Users that are interested in FoldBench are comparing it to the libraries listed below

• IntelliGen-AI / IntelliFold
  IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.
  ☆143Updated 2 months ago
• bytedance / apm
  ☆49Updated 3 months ago
• zhengkangjie / ESM-AA
  ☆76Updated 7 months ago
• peizhenbai / MapDiff
  Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch
  ☆37Updated 2 months ago
• luwei0917 / BindingGYM
  ☆29Updated last month
• ai4protein / VenusFSFP
  VenusFSFP: Few-Shot Protein Fitness Prediction
  ☆94Updated last month
• Gonglab-THU / SPIRED-Fitness
  ☆44Updated 3 months ago
• pyDock / AlphaFold3-Conda-Install
  Step-by-step guide to install and configure AlphaFold 3 using a Conda Python 3.11 environment. No system-wide installations required. ✅ …
  ☆20Updated last month
• MattMcPartlon / AttnPacker
  Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"
  ☆89Updated last year
• Supercomputing-System-AI-Lab / MegaFold
  ☆52Updated 2 months ago
• bytedance / PXDesignBench
  A Unified Evaluation Suite for Protein Design
  ☆79Updated 3 weeks ago
• Eikor / InstructPLM
  The first large protein language model trained follows structure instructions.
  ☆84Updated 4 months ago
• bytedance / ConfDiff
  Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models
  ☆66Updated last year
• Profluent-AI / progen3
  Public Release of ProGen3 family of Models
  ☆80Updated 2 months ago
• pengzhangzhi / ab_rmsd
  Calculate the RMSD between two antibody structure (including nanobody and antibody).
  ☆11Updated 2 years ago
• lezhang7 / MSAGen
  [NeurIPS 2024] MSA generative pretraining for advancing protein structure prediction
  ☆33Updated 6 months ago
• Huatsing-Lau / PPB-Affinity-DataPrepWorkflow
  workflow used to prepare PPB-Affinity database
  ☆27Updated last year
• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆78Updated last year
• A4Bio / FoldToken_open
  ☆22Updated 10 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆43Updated 9 months ago
• Gonglab-THU / GeoStab
  ☆37Updated 11 months ago
• stebliankin / piston
  Evaluating Protein Binding Interfaces with Transformer Networks
  ☆47Updated last year
• lujiarui / esmdiff
  Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)
  ☆64Updated 7 months ago
• alexechu / protpardelle
  ☆65Updated 2 years ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆81Updated last year
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆118Updated 3 months ago
• GENTEL-lab / AuroBind
  ☆30Updated 3 weeks ago
• wangxr0526 / EasIFA
  Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”
  ☆40Updated 6 months ago
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆36Updated 11 months ago
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆46Updated 10 months ago