FoldBench is a low-homology benchmark spanning proteins, nucleic acids, ligands, and six major interaction types, enabling assessments that were previously infeasible with task-specific datasets.
☆149May 9, 2026Updated 3 months ago
Alternatives and similar repositories for FoldBench
Users that are interested in FoldBench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.☆228Jun 23, 2026Updated 2 months ago
- Collection of peptide de novo sequencing algorithms by BEAM labs☆31May 24, 2026Updated 3 months ago
- Comprehensive benchmarking of protein-ligand structure prediction methods. (Nature Machine Intelligence)☆246Aug 10, 2026Updated 2 weeks ago
- Official repository of "ODesign: A World Model for Biomolecular Interaction Design"☆336Jul 1, 2026Updated last month
- An Open-source Drug Discovery Engine☆435Aug 16, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆423Feb 26, 2026Updated 6 months ago
- Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (bui…☆420Updated this week
- A fully open source biomolecular structure prediction model based on AlphaFold3☆844Updated this week
- A generalized computational framework for biomolecular modeling.☆443Aug 20, 2026Updated last week
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆2,041Aug 1, 2026Updated 3 weeks ago
- ☆68Jun 27, 2025Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆272Jul 24, 2025Updated last year
- Official repository of PXDesign☆250Dec 31, 2025Updated 7 months ago
- Profluent-E1 family of Protein Encoder Models☆115Mar 11, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆261Jan 3, 2026Updated 7 months ago
- ☆259Feb 12, 2026Updated 6 months ago
- Structural Quality Assessment for Biomolecular Structure Prediction Models☆100Aug 7, 2026Updated 3 weeks ago
- Biomolecular co-folding, binder filtering, and nanobody design☆90Jun 28, 2026Updated 2 months ago
- Learning the language of protein-protein interactions☆155Jun 15, 2026Updated 2 months ago
- ☆23Mar 15, 2024Updated 2 years ago
- A partially latent flow matching model for the joint generation of a protein’s amino acid sequence and full atomistic structure, includin…☆309Sep 23, 2025Updated 11 months ago
- Plausibility checks for generated molecule poses.☆401Mar 7, 2026Updated 5 months ago
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆281Apr 24, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- User friendly and accurate binder design pipeline☆1,196Aug 12, 2026Updated 2 weeks ago
- composite-objective protein design☆362Aug 11, 2026Updated 2 weeks ago
- Potts model-based protein sequence design☆111Jul 1, 2026Updated last month
- OriGene: A Self-Evolving Virtual Disease Biologist for Mechanism-Guided Therapeutic Target Discovery☆223Feb 24, 2026Updated 6 months ago
- ☆43Jul 28, 2025Updated last year
- Central repository for biomolecular foundation models with shared trainers and pipeline components☆946Updated this week
- A benchmark dataset for protein-ligand co-folding prediction☆88Aug 13, 2025Updated last year
- ☆147Jun 16, 2026Updated 2 months ago
- BoltzGen: Toward Universal Binder Design☆1,045May 28, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning☆872Updated this week
- de novo design of high affinity biological binders☆198Aug 11, 2026Updated 2 weeks ago
- ☆42Jan 21, 2026Updated 7 months ago
- Code for generating ensembles with IDPFold2☆25Aug 7, 2026Updated 3 weeks ago
- a universal molecular interaction modeling platform based on AlphaFold3, supporting structure prediction and analysis for various recepto…☆49Nov 20, 2025Updated 9 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆84Updated this week
- Official implementation for our paper: Repurposing AlphaFold3-like Protein Folding Models for Antibody Sequence and Structure Co-design☆48Jan 8, 2026Updated 7 months ago