nf-core / coproidLinks
Coprolite host Identification pipeline
☆13Updated last month
Alternatives and similar repositories for coproid
Users that are interested in coproid are comparing it to the libraries listed below
Sorting:
- A small R notebook describing how plot common (aDNA) population genetics PCAs using R and the tidyverse.☆13Updated 6 years ago
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆12Updated last year
- Analysis of inference methods on standard population models☆25Updated 4 years ago
- Metagenomic AnalySis with QUantitative pipEline☆12Updated 6 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- functions for analyzing phyloseq data☆28Updated 11 months ago
- deep learning prediction of geographic location from individual genome sequences☆52Updated 11 months ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆25Updated 5 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆56Updated last year
- Repository containing lists of all published ancient metagenomic (and related) samples and libraries☆77Updated this week
- ☆22Updated 2 years ago
- Method for dating admixture in ancient DNA specimens☆28Updated 3 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆32Updated 8 months ago
- Tools for visualising microbial community amplicon data☆70Updated 2 months ago
- Genome wide orthology inference and dNdS estimation☆96Updated 4 months ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆33Updated last month
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated 2 weeks ago
- Working with the outputs of sourmash in R☆28Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆78Updated 5 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated 2 years ago
- QIIME 2 plugin wrapping DADA2☆22Updated this week
- A visualization tool for exploratory data analysis of metagenomic data☆38Updated 3 years ago
- A framework for simulation-based inference in evolutionary biology☆28Updated 3 weeks ago
- Population genetic simulations in R☆61Updated 3 weeks ago
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆32Updated 4 months ago
- diversity estimation under ecological networks☆83Updated 5 months ago
- Parallelised and automated construction of metagenomic classifier databases of different tools☆20Updated 3 weeks ago
- gargammel is an ancient DNA simulator☆35Updated last year
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago