Rheumatoid Arthritis project. single cell RNA sequencing data.
☆15May 31, 2021Updated 5 years ago
Alternatives and similar repositories for RA_scRNA
Users that are interested in RA_scRNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains all analysis scripts used to explore single cell datasets for: Jardine and Webb et al., 2021, "Blood and immune …☆14May 4, 2022Updated 4 years ago
- Codes used for all the data analysis steps in the paper "Single-cell transcriptomics identifies an effectorness gradient shaping the resp…☆16Apr 15, 2020Updated 6 years ago
- Weighted gene co-expression network analysis for scRNA-seq data in Seurat☆10Dec 15, 2023Updated 2 years ago
- meta-analysis of new and published human WAT single cell data☆17Mar 12, 2025Updated last year
- Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)☆10Jul 22, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Molecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆15Jul 10, 2024Updated 2 years ago
- ☆12Aug 2, 2020Updated 6 years ago
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Oct 26, 2026Updated last week
- R package containing versions of NHANES data☆12Sep 1, 2026Updated 2 months ago
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39May 15, 2020Updated 6 years ago
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆13Feb 1, 2021Updated 5 years ago
- Display Bioinformatics PhD programs in the US☆10Mar 11, 2019Updated 7 years ago
- ☆14Jul 1, 2025Updated last year
- Trim, Align to genome, Deduplicate, Realign WGS sequencing samples☆18Feb 23, 2026Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆77Dec 13, 2024Updated last year
- ☆10Oct 16, 2022Updated 4 years ago
- ☆11Oct 4, 2023Updated 3 years ago
- Tools for correcting single cell barcodes for various scATAC-seq techniques and creating fragment files and spltting BAM files per cluste…☆30Updated this week
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 7 years ago
- 基于MIMICIII临床数据库,对传统基于简单统计特征的患者表示进行改进,使用遗传算法获取重要统计特征对患者进行表示,基于StackIng的模型Super Learner预测患者进入ICU24时后的死亡率,与包括疾病严重程度评分以及基于简单统计特征的患者表示构成的basel…☆14Jul 7, 2019Updated 7 years ago
- R code for SEER data analysis of solid tumor in different populations☆20Dec 7, 2017Updated 8 years ago
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆13Dec 8, 2021Updated 4 years ago
- RPKM for RNASeq counts☆16Oct 24, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Scripts to perform analysis in Agreement between two large pan-cancer CRISPR-Cas9 gene dependency datasets☆13Dec 5, 2019Updated 6 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated 7 months ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆19Jan 10, 2024Updated 2 years ago
- This is an early version of POREquality, an R Markdown document designed to be ran as part of a Nanopore local basecalling pipeline.☆10Aug 5, 2019Updated 7 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Legacy repository for asc_seurat up to v2. For v3+ use github.com/Pereira-Lab-UF/asc_seurat☆24May 18, 2026Updated 5 months ago
- Scripts to reproduce analyses of tradeSeq paper.☆17Feb 5, 2020Updated 6 years ago
- IRIS3: Integrated Cell-type-specific Regulon Inference Server from Single-cell RNA-Seq (https://bmbl.bmi.osumc.edu/iris3/)☆13Aug 26, 2026Updated 2 months ago
- visualization tools for exon/junction coverage☆12Dec 30, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆35Jan 26, 2022Updated 4 years ago
- scRNA数据分析中文教程☆11Jul 29, 2019Updated 7 years ago
- ☆13Dec 16, 2021Updated 4 years ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆13Oct 30, 2020Updated 6 years ago
- ☆17Mar 6, 2024Updated 2 years ago
- Real-time species-typing visualisation for nanopore data.☆12Apr 11, 2023Updated 3 years ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago