yeee904 / RA_scRNA

Related projects ⓘ

Alternatives and complementary repositories for RA_scRNA

• bei-lab / scRNA-AHCA
  Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs
  ☆39Updated 10 months ago
• BIMSBbioinfo / ikarus
  Identifying tumor cells at the single-cell level using machine learning
  ☆45Updated last week
• bischofp / single_cell_lung_adenocarcinoma
  ☆29Updated 2 years ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆53Updated 3 years ago
• McGranahanLab / TcellExTRECT
  ☆46Updated last year
• lmassier / hWAT_singlecell
  meta-analysis of new and published human WAT single cell data
  ☆12Updated last year
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆51Updated 2 years ago
• gabrielakinker / CCLE_heterogeneity
  ☆53Updated 10 months ago
• perslab / CELLEX
  CELLEX (CELL-type EXpression-specificity)
  ☆38Updated last year
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆32Updated last year
• wuaipinglab / ImmuCC
  Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
  ☆23Updated 3 years ago
• zhengtaoxiao / Single-Cell-Metabolic-Landscape
  Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data
  ☆23Updated 3 years ago
• hukai916 / scATACpipe
  ☆25Updated 3 weeks ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆55Updated 2 years ago
• ajwilk / 2020_Wilk_COVID
  Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…
  ☆47Updated 3 years ago
• andygxzeng / AMLHierarchies
  Analysis notebooks and data for AML hierarchies paper
  ☆15Updated last year
• wenweixiong / MARVEL
  ☆40Updated 3 months ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆55Updated 9 months ago
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆14Updated 8 months ago
• OSU-BMBL / ssread
  A single-cell and spatial RNA-seq database for Alzheimer’s Disease
  ☆19Updated 4 months ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆26Updated last year
• KChen-lab / METAFlux
  ☆48Updated 4 months ago
• songw01 / MEGENA
  Multiscale embedded gene co-expression network analysis
  ☆48Updated 10 months ago
• BaderLab / singleLiverCells
  Scripts for processing single liver cells RNA-Seq 10X Genomics Data
  ☆23Updated 6 years ago
• NBISweden / workshop-epigenomics-RTDs
  workshop website on readthedocs
  ☆19Updated last week
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆42Updated last year
• shendurelab / single-cell-ko-screens
  Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…
  ☆26Updated 2 years ago
• ncrna / PathogenTrack
  A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
  ☆27Updated last year
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆43Updated 8 months ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆43Updated 4 years ago