Sarah145 / scRNA_pre_processLinks
Processing scRNA-seq data with kallisto|bustools pipeline
☆20Updated 5 years ago
Alternatives and similar repositories for scRNA_pre_process
Users that are interested in scRNA_pre_process are comparing it to the libraries listed below
Sorting:
- ☆108Updated last year
- ☆149Updated this week
- A tool for detecting somatic variants in single cell data☆209Updated 10 months ago
- ☆118Updated 6 years ago
- Clustering scRNAseq by genotypes☆187Updated 8 months ago
- ☆172Updated 2 months ago
- Haplotype-aware CNV analysis from single-cell RNA-seq☆189Updated last week
- chromatin Variability Across Regions (of the genome!)☆178Updated last year
- Analysis pipeline for ATAC-seq data☆64Updated last year
- Basic workflow for ATAC-seq analysis☆82Updated last year
- CUT&RUN and CUT&Tag data processing and analysis☆110Updated 4 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆95Updated 2 years ago
- my notes for scATACseq analysis☆128Updated last year
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆60Updated last month
- ☆113Updated 4 months ago
- Clone of the Bioconductor repository for the SingleR package.☆192Updated last week
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆89Updated last year
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆215Updated last month
- Java tools for analyzing Drop-seq data☆128Updated this week
- ☆69Updated last year
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆102Updated 2 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆146Updated last year
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆201Updated last week
- Tools for single-cell data processing☆125Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆90Updated 2 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆107Updated 3 months ago
- Gene set scoring for single-cell data☆155Updated 2 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- Single Cell Cluster Evaluation☆95Updated 3 years ago