Processing scRNA-seq data with kallisto|bustools pipeline
☆23Mar 6, 2020Updated 6 years ago
Alternatives and similar repositories for scRNA_pre_process
Users that are interested in scRNA_pre_process are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- R package for Flexible dot plots☆29Jun 19, 2022Updated 3 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Jun 15, 2018Updated 7 years ago
- Cluster Identity Predictor (R package implementation)☆21Mar 8, 2022Updated 4 years ago
- RNA-Seq Unified Mapper☆27Sep 9, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Package to create MOVIE Plots☆12Oct 31, 2019Updated 6 years ago
- Analysis code and results for dreamlet☆11Apr 16, 2026Updated last month
- Classification of Single cells by Transfer Learning☆11Oct 11, 2025Updated 7 months ago
- ☆13Apr 16, 2021Updated 5 years ago
- ☆29Mar 18, 2022Updated 4 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆18Updated this week
- Unbiased single-cell transcriptomic data cell type identification☆15May 7, 2024Updated 2 years ago
- HPC based pipelines for variant calling using GATK☆17Apr 6, 2020Updated 6 years ago
- A pipeline for assemble chroloplast genome using short/long reads☆10Mar 31, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Ressources for Boinformatics Trainings☆13Nov 20, 2023Updated 2 years ago
- SCENIC+ analyses☆18Sep 26, 2023Updated 2 years ago
- ☆15Sep 20, 2022Updated 3 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 2 years ago
- RelocaTE2☆19Oct 6, 2023Updated 2 years ago
- ☆15Aug 5, 2022Updated 3 years ago
- ☆16Jun 26, 2025Updated 10 months ago
- ☆40Apr 5, 2021Updated 5 years ago
- Scripts for plotting figures and running analysis throughout the manuscript☆11Nov 2, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A library of "Micro Agents" that make it easy to add reliable intelligence to any application.☆13Sep 21, 2024Updated last year
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- SHAPE-guided RNA structural homology search☆12Aug 12, 2025Updated 9 months ago
- Cluster Evaluation R package (ClueR) for detecting key signaling events from time-series phosphoproteomics data☆11Jan 10, 2024Updated 2 years ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Feb 4, 2023Updated 3 years ago
- ☆17Jul 29, 2021Updated 4 years ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Jan 7, 2020Updated 6 years ago
- ☆27Jan 29, 2026Updated 3 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Feb 23, 2023Updated 3 years ago
- Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)☆16Sep 19, 2024Updated last year
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆23May 29, 2018Updated 7 years ago
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 5 years ago
- Rocking R at UMCCR☆10Oct 11, 2020Updated 5 years ago
- Toolkit for single-cell analysis of chromatin accessibility☆12Feb 27, 2020Updated 6 years ago
- An r interface to perform ROMA☆10Aug 24, 2018Updated 7 years ago