Sanity check Variant Call Format (VCF) files.
☆37Mar 18, 2016Updated 10 years ago
Alternatives and similar repositories for checkVCF
Users that are interested in checkVCF are comparing it to the libraries listed below
Sorting:
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Mar 24, 2017Updated 8 years ago
- ☆22Feb 25, 2026Updated 3 weeks ago
- An R package for creating mirrored Manhattan plots☆18Sep 30, 2022Updated 3 years ago
- ☆29Mar 5, 2024Updated 2 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆34May 15, 2019Updated 6 years ago
- Generic methods, types and modules for the BioJulia ecosystem.☆12Jul 11, 2024Updated last year
- ☆13Feb 10, 2021Updated 5 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- A Toolset for Chromosome X-Wide Association Studies☆12May 1, 2018Updated 7 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- Enhanced version of the FastQTL QTL mapper☆72Mar 19, 2023Updated 3 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆53Feb 1, 2019Updated 7 years ago
- R package for creating simulated summary statistics and testing MR methods☆12Sep 2, 2020Updated 5 years ago
- Toolkit for QTL mapping and meta-analysis.☆17May 24, 2022Updated 3 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42May 2, 2018Updated 7 years ago
- variant integration methods for the 1000 Genomes Project☆21Jan 16, 2018Updated 8 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Oct 14, 2017Updated 8 years ago
- Configs and descriptions of circos plots created on FUMA web application☆15Dec 10, 2017Updated 8 years ago
- A shell script which implements GATK pipeline for variant calling.☆15Nov 30, 2014Updated 11 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Nov 4, 2019Updated 6 years ago
- Rare variant test software for next generation sequencing data☆141Jan 26, 2022Updated 4 years ago
- A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps…☆15Feb 5, 2026Updated last month
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Dec 18, 2022Updated 3 years ago
- Make interactive LocusZoom plots from a local GWAS file☆10May 9, 2025Updated 10 months ago
- Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool☆179Mar 11, 2026Updated last week
- Spatial omics analysis toolbox☆19Jul 12, 2024Updated last year
- shifts hg19/38 genomic position for feasible input format.☆12Jun 8, 2023Updated 2 years ago
- K-RET: Knowledgeable Biomedical Relation Extraction System☆10Feb 22, 2025Updated last year
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Jan 16, 2026Updated 2 months ago
- A genotype query interface.☆136Mar 29, 2021Updated 4 years ago
- Browser for ExAC consortium data☆12Oct 23, 2017Updated 8 years ago
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated 2 weeks ago
- SEEKIN: SEquence-based Estimation of KINship☆14Oct 11, 2017Updated 8 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Jun 17, 2022Updated 3 years ago
- The Modular Aligner and The Modular SV Caller☆46Jul 18, 2023Updated 2 years ago
- An accurate and efficient HLA imputation method.☆27Mar 16, 2023Updated 3 years ago
- IBD based kinship estimation☆16Mar 3, 2023Updated 3 years ago
- Tools for early stage alignment file processing☆95Mar 12, 2019Updated 7 years ago