zhanxw / checkVCFLinks
Sanity check Variant Call Format (VCF) files.
☆37Updated 9 years ago
Alternatives and similar repositories for checkVCF
Users that are interested in checkVCF are comparing it to the libraries listed below
Sorting:
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- ☆69Updated 3 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 8 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ☆40Updated 7 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- ☆27Updated 6 months ago
- R package for bcbio RNA-seq analysis.☆62Updated last year
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Analysis pipeline for cancer sequencing data☆112Updated 7 months ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- TOPMed analysis pipeline☆52Updated 2 years ago
- Identifying recurrent mutations in cancer☆39Updated 4 years ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 8 years ago
- ☆35Updated 9 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated last month
- Burden testing against public controls☆50Updated last year
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- Functional genomics and genome-wide association studies☆69Updated 7 years ago
- ☆72Updated 2 years ago
- Fuji plot—a circos representation of multiple GWAS results—☆92Updated 6 months ago