zhanxw / checkVCFLinks
Sanity check Variant Call Format (VCF) files.
☆37Updated 9 years ago
Alternatives and similar repositories for checkVCF
Users that are interested in checkVCF are comparing it to the libraries listed below
Sorting:
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ☆40Updated 7 years ago
- Identifying recurrent mutations in cancer☆37Updated 4 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆35Updated 8 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆72Updated 5 months ago
- ☆78Updated 11 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated last year
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- ☆69Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆32Updated 6 years ago
- Burden testing against public controls☆50Updated last year
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- Genome-wide imputation pipeline☆32Updated last year
- Multi-sample somatic variant caller☆52Updated 3 years ago
- combining p-values using modified stouffer-liptak for spatially correlated results (probes)☆46Updated 3 years ago
- Functional genomics and genome-wide association studies☆67Updated 7 years ago
- ☆71Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- An awk-like VCF parser☆56Updated last year
- ☆26Updated 2 months ago
- R package for bcbio RNA-seq analysis.☆62Updated 11 months ago
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago