chitin: an awful shell for awful bioinformaticians
☆61Mar 25, 2020Updated 5 years ago
Alternatives and similar repositories for chitin
Users that are interested in chitin are comparing it to the libraries listed below
Sorting:
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- Utilities for analyzing next generation sequencing data☆17Sep 28, 2018Updated 7 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 9 years ago
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Jul 5, 2021Updated 4 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 9 years ago
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆118Jan 29, 2026Updated 3 weeks ago
- Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage☆13May 16, 2016Updated 9 years ago
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 6 years ago
- Convert sequence IDs between ucsc/refseq/genbank☆16Aug 28, 2018Updated 7 years ago
- A collection of well-known bioinformatics programs.☆25Apr 24, 2015Updated 10 years ago
- A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set☆18Feb 12, 2016Updated 10 years ago
- Transcript quantification import with automatic metadata detection☆68Feb 3, 2026Updated 3 weeks ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- reference free variant assembly☆34Jul 14, 2023Updated 2 years ago
- ☆18Feb 24, 2017Updated 9 years ago
- Malleable All-seeing Journal Of Research Artifacts☆35May 22, 2023Updated 2 years ago
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Jun 28, 2018Updated 7 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 5 years ago
- A read extraction and realignment tool for next generation sequencing data☆105Oct 29, 2022Updated 3 years ago
- Using kallisto for metagenomic analysis☆49Jan 12, 2017Updated 9 years ago
- Merge transcriptome assemblies☆31Oct 6, 2016Updated 9 years ago
- Efficient handling of FASTQ files from Python☆51Nov 28, 2025Updated 2 months ago
- A long read simulator based on badread idea☆22Oct 7, 2022Updated 3 years ago
- Scripts and instructions for submitting annotated microbial genomes to Genbank☆15Feb 23, 2016Updated 10 years ago
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 5 years ago
- DEPRECIATED! Please use nf-core/tools instead☆19Aug 8, 2018Updated 7 years ago
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 7 years ago
- Very simple, pure python, BAM file reader☆79Feb 20, 2019Updated 7 years ago
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆248Aug 10, 2025Updated 6 months ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 8 months ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Mar 17, 2022Updated 3 years ago
- ☆18Nov 16, 2015Updated 10 years ago
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆75Jun 28, 2017Updated 8 years ago
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 2 months ago