SamStudio8 / chitinLinks
chitin: an awful shell for awful bioinformaticians
☆61Updated 5 years ago
Alternatives and similar repositories for chitin
Users that are interested in chitin are comparing it to the libraries listed below
Sorting:
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- A collection of well-known bioinformatics programs.☆25Updated 10 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Response to blog post about Salmon☆37Updated 8 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated last year
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Bioinformatics tool outputs converter to JSON or YAML☆35Updated 4 months ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Updated 3 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 14 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- ☆43Updated 9 years ago
- just annotate it, dammit!☆93Updated 2 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- A 3'-end adapter contaminant trimmer☆95Updated 7 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- a pileup library that embraces the huge☆43Updated 5 years ago