chitin: an awful shell for awful bioinformaticians
☆60Mar 25, 2020Updated 6 years ago
Alternatives and similar repositories for chitin
Users that are interested in chitin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago
- R Interface to the NCBI SRA metadata☆23Nov 19, 2018Updated 7 years ago
- Stupid Simple Structural Variant View☆26Nov 21, 2016Updated 9 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆75Jun 28, 2017Updated 9 years ago
- Create cwl workflows by writing a simple Python script☆39Apr 29, 2020Updated 6 years ago
- Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage☆13May 16, 2016Updated 10 years ago
- DEPRECIATED! Please use nf-core/tools instead☆19Aug 8, 2018Updated 8 years ago
- Mutation Spectra Analysis☆10Mar 15, 2018Updated 8 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 10 years ago
- Book introducing practical computing concepts to biologists☆11Nov 30, 2024Updated last year
- HGNC Comparison of Orthology Predictions (HCOP)☆15Mar 22, 2018Updated 8 years ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Clann: Investigation of phylogenomic signal using supertrees☆18Jul 25, 2026Updated 3 months ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 10 years ago
- rapidly rid reads of horrid humans☆15Dec 2, 2021Updated 4 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- Utilities for analyzing next generation sequencing data☆17Sep 28, 2018Updated 8 years ago
- Tip and tricks for VCF files☆21Sep 26, 2018Updated 8 years ago
- A tiny package manager for crucial unix and bioinformatics tools☆27Apr 30, 2015Updated 11 years ago
- Sweep Inference Framework (controlling for correlation)☆29Jul 10, 2024Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Apr 19, 2018Updated 8 years ago
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- Using kallisto for metagenomic analysis☆49Jan 12, 2017Updated 9 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆38Jul 5, 2021Updated 5 years ago
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆120Jan 29, 2026Updated 9 months ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines☆68Jun 3, 2020Updated 6 years ago
- NExt generation Analysis Toolbox☆14Oct 18, 2015Updated 11 years ago
- simple jobs submission via command-line for AWS batch☆80May 21, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 9 years ago
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆251Aug 10, 2025Updated last year
- adds sample names and read-group (RG) tags to BAM alignments☆51Dec 14, 2020Updated 5 years ago
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 7 years ago
- Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/☆106Jan 12, 2026Updated 9 months ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated last year