SamStudio8 / chitin
chitin: an awful shell for awful bioinformaticians
☆61Updated 5 years ago
Alternatives and similar repositories for chitin:
Users that are interested in chitin are comparing it to the libraries listed below
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- A collection of well-known bioinformatics programs.☆25Updated 9 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- A 3'-end adapter contaminant trimmer☆94Updated 7 years ago
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated 5 months ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.☆19Updated 7 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 2 weeks ago
- Fast but inaccurate adapter trimmer for Illumina reads☆14Updated 3 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- An awk-like VCF parser☆56Updated last year
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 14 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 7 months ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- just annotate it, dammit!☆91Updated last year
- Edinburgh Genomics MinION training 2016☆33Updated 8 years ago
- A collection of modules and sub-workflows for Nextflow☆26Updated 2 weeks ago
- Response to blog post about Salmon☆37Updated 7 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Understand your transcriptome assembly☆101Updated last year
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆46Updated 3 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago