SamStudio8 / chitinLinks
chitin: an awful shell for awful bioinformaticians
☆61Updated 5 years ago
Alternatives and similar repositories for chitin
Users that are interested in chitin are comparing it to the libraries listed below
Sorting:
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Updated 3 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Bioinformatics tool outputs converter to JSON or YAML☆35Updated 3 months ago
- A collection of well-known bioinformatics programs.☆25Updated 10 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated last year
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 9 months ago
- What's The Function of these genes?☆22Updated 8 years ago
- ☆36Updated 5 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Simple tool to verticalize text delimited files.☆37Updated last year
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Response to blog post about Salmon☆37Updated 8 years ago
- A 3'-end adapter contaminant trimmer☆95Updated 7 years ago
- A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.☆19Updated 7 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- a pileup library that embraces the huge☆43Updated 4 years ago
- just annotate it, dammit!☆92Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago