Alternatives and similar repositories for appyter:

Users that are interested in appyter are comparing it to the libraries listed below

• ismms-himc / codex_dashboard
  Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
  ☆16Updated last year
• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆15Updated 2 years ago
• hubmapconsortium / portal-ui
  HuBMAP Data Portal front end
  ☆12Updated this week
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 6 months ago
• JonnyTran / OpenOmics
  A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
  ☆32Updated 7 months ago
• mlf-core / mlf-core
  CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.
  ☆45Updated last year
• theislab / batchglm
  Fit generalized linear models in python.
  ☆27Updated last year
• broadinstitute / taiga
  Taiga for Dataset management
  ☆12Updated last year
• hammerlab / t-cell-relation-extraction
  Literature mining for T cell relations
  ☆23Updated 2 years ago
• wheretrue / fasql
  DuckDB Extension for reading and writing FASTA and FASTQ Files
  ☆20Updated last year
• hammerlab / cohorts
  Utilities for analyzing mutations and neoepitopes in patient cohorts
  ☆20Updated 6 years ago
• Stemanz / restring
  Functional enrichment terms aggregator
  ☆18Updated 10 months ago
• krassowski / nbpipeline
  Snakemake-like pipeline manager for reproducible Jupyter Notebooks
  ☆17Updated 3 years ago
• Pex2892 / PETAL
  PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis
  ☆35Updated 2 years ago
• Shamir-Lab / NEMO
  ☆16Updated 4 years ago
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆40Updated this week
• biocommons / bioutils
  provides common tools and lookup tables used primarily by the hgvs and uta packages
  ☆22Updated 3 months ago
• schlegelp / catheat
  Plot categorical heatmaps with seaborn
  ☆18Updated 2 years ago
• HumanCellAtlas / table-testing
  requirements, examples, and tests for expression matrix file formats
  ☆22Updated 6 years ago
• krassowski / gsea-api
  Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
  ☆15Updated last year
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• statbiophys / SONIA
  Infer selection pressures on features of amino acid CDR3 sequences.
  ☆23Updated 10 months ago
• esacinc / PDC-Public
  The public repository for the Proteomic Data Commons UI and APIs
  ☆13Updated 8 months ago
• krassowski / multi-omics-state-of-the-field
  Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
  ☆26Updated last year
• insitro / EmbedGEM
  EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery
  ☆21Updated 4 months ago
• ismms-himc / visium-clustergrammer2
  Spatial Transcriptomics Dashboard
  ☆28Updated last year
• GuiltyTargets / guiltytargets
  Target prioritization using network representation learning
  ☆11Updated 3 years ago
• PathwayCommons / factoid
  A project to capture biological pathway data from academic papers
  ☆29Updated 2 weeks ago
• unlearnai / genemunge
  Tools for munging genomic data
  ☆21Updated 5 years ago
• opentargets-archive / data_pipeline
  Code for the data processing pipeline
  ☆17Updated 3 years ago