MaayanLab / appyter
jinja2-enabled jupyter notebooks
☆37Updated 2 weeks ago
Alternatives and similar repositories for appyter:
Users that are interested in appyter are comparing it to the libraries listed below
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 9 months ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆32Updated 9 months ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Updated last year
- Literature mining for T cell relations☆23Updated 2 years ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated 2 years ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆22Updated 2 months ago
- Functional enrichment terms aggregator☆18Updated last year
- Fit generalized linear models in python.☆27Updated 2 years ago
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆26Updated last year
- A software toolkit for the interconversion of standard data models for phenotypic data☆13Updated 2 weeks ago
- Examples using Clustergrammer2 to explore high-dimensional datasets.☆40Updated 4 years ago
- CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.☆45Updated 2 years ago
- Map your disease and phenotype terms to the Open Targets platform ontology☆21Updated 5 months ago
- BioThings API framework - Making high-performance API for biological annotation data☆47Updated this week
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 6 years ago
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆18Updated 5 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆15Updated 2 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- A knowledge resource on cell lines - From SIB CALIPHO group☆14Updated last year
- Issue tracker for Open Targets Platform and Open Targets Genetics Portal☆12Updated last month
- A specification and Python implementation for representing variants from Multiplexed Assays of Variant Effect.☆11Updated this week
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆31Updated last year
- HuBMAP Data Portal front end☆13Updated this week
- A metadata commons to store research software metadata☆41Updated this week
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆20Updated last year
- Target discovery platform for exploring rankings of genes, disease models, and other entities. @JKU-ICG @datavisyn☆12Updated last year
- PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis☆35Updated 2 years ago
- Draft cell type definitions from data - candidates for inclusion in CL☆12Updated 4 months ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Updated 4 years ago
- ☆24Updated 4 years ago