jamesjcai / scGEAToolboxLinks
scGEAToolbox: Matlab toolbox for single-cell gene expression analyses
☆28Updated 3 weeks ago
Alternatives and similar repositories for scGEAToolbox
Users that are interested in scGEAToolbox are comparing it to the libraries listed below
Sorting:
- SpatialCorr: Identify gene sets with spatially varying correlation☆17Updated last year
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Updated last month
- An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data☆18Updated 4 years ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆54Updated last year
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Updated last year
- ☆51Updated last month
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆20Updated 2 years ago
- Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas☆91Updated 3 weeks ago
- Multi-omics factor analysis v2☆54Updated last month
- Individual level Differential Expression Analysis for Single cells☆26Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- Nonnegative spatial factorization for multivariate count data☆62Updated 2 years ago
- SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …☆22Updated 5 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- A python package implements scTenifoldnet and scTenifoldknk☆31Updated 3 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆34Updated 3 months ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆56Updated last year
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Updated 2 years ago
- ☆14Updated 5 years ago
- SPROD: Spatial expression profiling de-noising☆36Updated 2 years ago
- An implementation of MNN (Mutual Nearest Neighbors) correct in python.☆76Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- Cytograph version used for adult human-brain analysis☆91Updated 5 months ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- Information-based dimensionality reduction☆29Updated last year