jamesjcai / scGEAToolbox
scGEAToolbox: Matlab toolbox for single-cell gene expression analyses
☆24Updated this week
Related projects ⓘ
Alternatives and complementary repositories for scGEAToolbox
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆25Updated 10 months ago
- SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …☆21Updated 3 years ago
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆19Updated last year
- ☆12Updated 4 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆21Updated 2 years ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆43Updated 4 years ago
- Cell-specific Network Constructed by Single-cell RNA Sequencing Data☆21Updated 5 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆16Updated 3 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆54Updated last month
- Multiview Intercellular SpaTial modeling framework☆48Updated 7 months ago
- Nonnegative spatial factorization for multivariate count data☆57Updated last year
- ☆10Updated last year
- Image processing pipeline for spatial projects☆15Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆43Updated 7 months ago
- Python client for the OmniPath web service☆39Updated 5 months ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆41Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆23Updated 3 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆34Updated 2 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…☆43Updated 2 weeks ago
- ☆31Updated 5 years ago
- An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data☆16Updated 3 years ago
- Multi-omics factor analysis v2☆36Updated last month
- ☆45Updated 7 months ago
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- TENET is a tool for reconstructing gene regulatory networks from pseudo-time ordered single-cell transcriptomic data.☆40Updated 2 years ago
- ☆47Updated 6 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- Human cortical cell types☆24Updated 5 years ago
- cTPnet Package☆23Updated 2 years ago