Real-time structure motif searching in protein 3D structures using an inverted index strategy
☆14Jul 19, 2025Updated 9 months ago
Alternatives and similar repositories for strucmotif-search
Users that are interested in strucmotif-search are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Java library for handling text and BinaryCIF files.☆13Jan 13, 2026Updated 3 months ago
- SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinfor…☆11Aug 26, 2025Updated 7 months ago
- BinaryCIF is a data format for storing text based CIF files using a more efficient binary encoding.☆31Oct 14, 2024Updated last year
- Protein structure descriptors and alignment based on 3D Zernike moments.☆39Apr 10, 2026Updated last week
- Python interface for the RCSB search API.☆20Mar 20, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆15Apr 14, 2023Updated 3 years ago
- ☆17Aug 10, 2020Updated 5 years ago
- Python package for handling IHM mmCIF and BinaryCIF files☆18Updated this week
- Methods for mapping genomic data onto 3D protein structure.☆28May 17, 2022Updated 3 years ago
- Methods for mapping proteomics data on 3D protein structure.☆15Jan 18, 2020Updated 6 years ago
- mmCIF-based extension dictionary for computed structure models☆24Feb 5, 2026Updated 2 months ago
- Benchmarks for Primitive Collections☆13Apr 4, 2023Updated 3 years ago
- programs and scripts for molecular structure analysis☆11Mar 26, 2026Updated 3 weeks ago
- MapQ is a plugin for UCSF Chimera to calculate Q-scores of an atomic model in a cryoEM map.☆17Aug 26, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A JavaScript molecular graphics program☆22Updated this week
- 🔍 Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data…☆11Oct 16, 2018Updated 7 years ago
- ChemSpaceAL: An Efficient Active Learning Methodology Applied to Protein-Specific Molecular Generation☆16Dec 14, 2023Updated 2 years ago
- Contact-based protein structure prediction☆10Feb 12, 2019Updated 7 years ago
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago
- Cryptic pocket prediction using AlphaFold 2☆25Nov 27, 2022Updated 3 years ago
- pKAI: a fast and interpretable deep learning approach to accurate electrostatics-driven pKa prediction☆31Sep 16, 2021Updated 4 years ago
- The java implementation of the MMTF API, decoder and encoder.☆11Dec 19, 2025Updated 3 months ago
- Deep learning for cryo-EM maps post-processing☆58Jun 26, 2025Updated 9 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆29Dec 20, 2024Updated last year
- ☆12Dec 28, 2025Updated 3 months ago
- Source code and data files for "PEMT: A patent enrichment tool with applicability in drug discovery"☆16Jan 27, 2025Updated last year
- 2D portraits of 3D protein structures☆27Mar 12, 2026Updated last month
- The central entry point to the P2Rank project with links to the individual projects, including references to documentation, datasets, etc…☆13Feb 11, 2026Updated 2 months ago
- Python interface for the RCSB PDB search API.☆66Mar 26, 2025Updated last year
- Subpocket-based fingerprint for kinase pocket comparison☆34Sep 24, 2023Updated 2 years ago
- Code for running RFdiffusion☆15Oct 23, 2025Updated 5 months ago
- Models trained on the SPICE dataset☆10Sep 23, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- macromolecular crystallography library and utilities☆339Apr 8, 2026Updated last week
- ☆10Jan 24, 2023Updated 3 years ago
- A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"☆38Oct 30, 2023Updated 2 years ago
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- GNN enabled surrogate modeling for chemical docking☆16Nov 3, 2022Updated 3 years ago
- ☆11Jan 2, 2021Updated 5 years ago
- Arch Linux with ZFS installer☆10Dec 8, 2025Updated 4 months ago