Alternatives and similar repositories for metaworkflow

Users that are interested in metaworkflow are comparing it to the libraries listed below

• WandeRum / MVI-evaluation

  View on GitHub
  Missing value imputation and evaluation, especially for metabolomics data sets
  ☆19Jun 27, 2018Updated 7 years ago
• respiratory-immunology-lab / metabolome-lipidome-MSDIAL

  View on GitHub
  Guide to processing raw LCMS metabolomic and lipidomic data using MS-DIAL, followed by data pre-processing and secondary annotation (of m…
  ☆23Feb 5, 2024Updated 2 years ago
• yufree / xcmsrocker

  View on GitHub
  Rocker image for metabolomics data analysis
  ☆13Oct 25, 2025Updated 3 months ago
• LiChenPU / NetID

  View on GitHub
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆51Aug 28, 2023Updated 2 years ago
• ualr-Rgroup / metabolomics-in-r

  View on GitHub
  Supporting material for "Processing and visualization of metabolomics data using R"
  ☆20Jan 3, 2017Updated 9 years ago
• yufree / enviGCMS

  View on GitHub
  GC/LC-MS data analysis for environmental science
  ☆17May 20, 2025Updated 8 months ago
• Philipbear / BUDDY_Metabolomics

  View on GitHub
  Molecular formula discovery via bottom-up MS/MS interrogation
  ☆13Sep 4, 2024Updated last year
• pcastellanoescuder / POMAShiny

  View on GitHub
  Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis
  ☆18May 3, 2023Updated 2 years ago
• RASpicer / MetabolomicsTools

  View on GitHub
  ☆55Apr 15, 2021Updated 4 years ago
• lemaslab / rump

  View on GitHub
  A Reproducible Untargeted Metabolomics Data Processing Pipeline
  ☆11Mar 18, 2021Updated 4 years ago
• qunjie-zhang / gfanno

  View on GitHub
  Gene Family Annotation Workflow
  ☆11Mar 26, 2024Updated last year
• fei0810 / Triti-Map

  View on GitHub
  A Snakemake-based pipeline for gene mapping in Triticeae.
  ☆11Mar 5, 2022Updated 3 years ago
• GuangchuangYu / rvcheck

  View on GitHub
  R/Package Version Check
  ☆22Oct 22, 2021Updated 4 years ago
• ropensci / jagstargets

  View on GitHub
  Reproducible Bayesian data analysis pipelines with targets and JAGS
  ☆11Dec 3, 2024Updated last year
• ratthachat / deep-rna

  View on GitHub
  Easy & Pretrained SOTA Deep Learning for RNA strings
  ☆12Apr 15, 2022Updated 3 years ago
• slfan2013 / Shiny-SERRF

  View on GitHub
  ☆12Nov 16, 2021Updated 4 years ago
• ZhuMetLab / MetImage

  View on GitHub
  Converting LC−MS-based Untargeted Metabolomics Data into Image towards Clinical Diagnosis
  ☆12Apr 13, 2023Updated 2 years ago
• moj-analytical-services / rpackage_training

  View on GitHub
  Making and developing R packages
  ☆20Jan 6, 2026Updated last month
• biswapriyamisra / metabolomics

  View on GitHub
  Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016
  ☆12Mar 7, 2020Updated 5 years ago
• secimTools / SECIMTools

  View on GitHub
  A set of metabolomics tools for use in Galaxy
  ☆11Sep 2, 2022Updated 3 years ago
• saezlab / MetaProViz

  View on GitHub
  R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.
  ☆17Jan 30, 2026Updated 2 weeks ago
• wilsontom / msconverteR

  View on GitHub
  Create .mzML files through the R Console
  ☆12Aug 27, 2025Updated 5 months ago
• guokai8 / bioAnno

  View on GitHub
  Build Annotation package by using information from KEGG, NCBI, Ensembl
  ☆15May 4, 2023Updated 2 years ago
• thomasp85 / grid

  View on GitHub
  personal devel version of grid
  ☆13Apr 29, 2020Updated 5 years ago
• jtr13 / cc19

  View on GitHub
  Source code for EDAV Fall 2019 community contribution bookdown book:
  ☆13Mar 7, 2021Updated 4 years ago
• workflow4metabolomics / workflow4metabolomics

  View on GitHub
  Workflow4Metabolomics meta repository
  ☆11May 23, 2025Updated 8 months ago
• taotaoyuan / genome-assemble-and-annotation

  View on GitHub
  基因组组装注释流程及脚本
  ☆16Feb 12, 2023Updated 3 years ago
• jhrcook / ggasym

  View on GitHub
  Plots three different color schemes on the top-left and bottom-right triangles and the diagonal of a symmetric matrix
  ☆12Jul 11, 2021Updated 4 years ago
• shuzhao-li-lab / espol-workshop

  View on GitHub
  5-day workshop on Metabolomics and Data Analysis
  ☆18Sep 1, 2019Updated 6 years ago
• DivadNojnarg / golemWebR

  View on GitHub
  A test repository to deploy golem powered Shiny app on Netlify with webR
  ☆15Jul 24, 2023Updated 2 years ago
• deweylab / detonate

  View on GitHub
  DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
  ☆14Jun 22, 2016Updated 9 years ago
• frankgenome / DataColor

  View on GitHub
  DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping
  ☆16Nov 23, 2023Updated 2 years ago
• pmur002 / gridgraphics

  View on GitHub
  Redraw base graphics as grid graphics
  ☆33Jan 26, 2026Updated 2 weeks ago
• rjournal / rjournal.github.io

  View on GitHub
  Rjournal website sandbox, and deploy site. You can preview the changes at the address below.
  ☆19Updated this week
• numbats / gganimate-workshop

  View on GitHub
  Content for the NUMBAT workshop on gganimate (22/3/19)
  ☆13Jun 15, 2019Updated 6 years ago
• jsalignon / cactus

  View on GitHub
  Chromatin ACcessibility and Transcriptomics Unifying Software
  ☆17Oct 25, 2024Updated last year
• joannawolthuis / MetaboShiny

  View on GitHub
  Repository for MetaboShiny, a novel R and RShiny based metabolomics data analysis package.
  ☆17Updated this week
• kwanjeeraw / metabox

  View on GitHub
  a toolbox for metabolomic data analysis, visualization and ‘omic’ integration
  ☆13Jun 21, 2018Updated 7 years ago
• onnela-lab / gptools

  View on GitHub
  Gaussian processes on graphs and lattices in Stan.
  ☆19Mar 17, 2025Updated 10 months ago