Alternatives and similar repositories for awesome-biochem-ai

Users that are interested in awesome-biochem-ai are comparing it to the libraries listed below

• AspirinCode / GENiPPI
  Interface-aware molecular generative framework for protein-protein interaction modulators
  ☆15Updated 6 months ago
• samgoldman97 / enzyme-datasets
  Enzyme datasets used to benchmark enzyme-substrate promiscuity models
  ☆35Updated 4 years ago
• NRGlab / Surfaces
  ☆15Updated 4 months ago
• kliment-olechnovic / voronota
  Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic b…
  ☆35Updated last week
• molecularmodelinglab / plantain
  Fast and accurate molecular docking with an AI pose scoring function
  ☆40Updated last year
• strauchlab / scaffold_design
  ☆17Updated last year
• Jnelen / DiffDockHPC
  DiffDock implementation that adds support for HPC execution using Slurm and Singularity
  ☆26Updated last month
• ur-whitelab / peptide-dashboard
  Web cards/apps describing peptides
  ☆29Updated 2 years ago
• PDBeurope / protein-cluster-conformers
  Clusters protein chains based on CA distance difference
  ☆14Updated 5 months ago
• BioComputingUP / ring-pymol
  This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
  ☆27Updated 5 months ago
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆30Updated 2 weeks ago
• swansonk14 / chemfunc
  Useful functions for working with small molecules
  ☆53Updated 6 months ago
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆40Updated last year
• Faezov / PDBrenum
  ☆30Updated 2 months ago
• gitter-lab / metl-pretrained
  Pretrained METL models with minimal dependencies
  ☆14Updated 2 months ago
• NasimAbdollahi / NodeCoder
  NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.
  ☆33Updated last year
• samgoldman97 / enz-pred
  ☆17Updated 3 years ago
• volkamerlab / kissim
  Subpocket-based fingerprint for kinase pocket comparison
  ☆34Updated last year
• aivant / ShapeLinker
  ☆23Updated last year
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆31Updated last month
• kamerlinlab / KIN
  Repo for the publication titled: "Key Interaction Networks: Identifying Evolutionarily Conserved Non-Covalent Interaction Networks Across…
  ☆17Updated last year
• coleygroup / shepherd-score
  Interaction profile extraction, scoring, alignment and evaluation of ShEPhERD. [ICLR 2025]
  ☆26Updated last month
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆38Updated 3 months ago
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆26Updated last year
• SigmaGenX / TamGen
  ☆36Updated last month
• bwicky / oligomer_hallucination
  ☆36Updated last year
• smiles724 / PeptideDesign
  ☆28Updated last month
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated last month
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆19Updated last week