Alternatives and similar repositories for proteindj

Users that are interested in proteindj are comparing it to the libraries listed below

• cytokineking / FreeBindCraft
  BindCraft modified to make PyRosetta use and installation optional: no license needed
  ☆119Updated 2 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆63Updated 4 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆56Updated 5 months ago
• samuelmurail / af_analysis
  Analysis of alphafold and colabfold results
  ☆34Updated last month
• Jfeldman34 / AF3Complex
  ☆53Updated 7 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆95Updated 2 months ago
• bene837 / af2seq
  ☆47Updated last year
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆113Updated last week
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆87Updated 8 months ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆35Updated 7 years ago
• Kuhlman-Lab / evopro
  ☆94Updated 3 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆53Updated 4 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆78Updated 3 months ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆67Updated 11 months ago
• cryoEM-CNIO / BinderFlow
  Code for running BinderFlow
  ☆60Updated 2 months ago
• MSDLLCpapers / ovo
  OVO, an open-source ecosystem for de novo protein design
  ☆104Updated 3 weeks ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆50Updated 9 months ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆39Updated 4 months ago
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆32Updated last year
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆70Updated 7 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆72Updated last year
• LAnAlchemist / Pseudocycle_small_molecule_binder
  Small_molecule_binder_design_use_pseudocycles
  ☆23Updated last year
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…
  ☆63Updated 3 months ago
• regeneron-mpds / propermab
  ☆45Updated 10 months ago
• RP3Net / RP3Net
  ☆15Updated 8 months ago
• SLx64 / af3cli
  A command-line interface and Python library for generating AlphaFold3 input files.
  ☆38Updated last month
• cddlab / alphafold3_tools
  Toolkit for alphafold3 input and output files
  ☆95Updated last month
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆80Updated 2 months ago
• dina-lab3D / CombFold
  ☆91Updated last year
• jafetgado / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆23Updated 9 months ago