Official repository for the ProteinDJ protein design pipeline
☆108Mar 26, 2026Updated 2 weeks ago
Alternatives and similar repositories for proteindj
Users that are interested in proteindj are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- The central entry point to the P2Rank project with links to the individual projects, including references to documentation, datasets, etc…☆13Feb 11, 2026Updated 2 months ago
- ☆27Aug 8, 2025Updated 8 months ago
- HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…☆74Updated this week
- ☆12May 3, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides …☆13Feb 25, 2025Updated last year
- ☆22Dec 4, 2025Updated 4 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆124Oct 24, 2025Updated 5 months ago
- EvolveX, a de novo antibody computational design pipeline.☆23Sep 18, 2025Updated 6 months ago
- FEP-SPell-ABFE: An Open Source Alchemical Absolute Binding Free Energy Calculation Workflow for Drug Discovery☆83Jan 8, 2025Updated last year
- ☆135Aug 8, 2024Updated last year
- PyPEF – Pythonic Protein Engineering Framework☆14Updated this week
- The official GitHub repository for the Nature Communications paper "Computational Design of Generalist Cyclopropanases with Stereodiverge…☆13Jan 23, 2026Updated 2 months ago
- OVO, an open-source ecosystem for de novo protein design☆124Updated this week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Demos of many Rosetta applications☆24Jun 10, 2025Updated 10 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆138Nov 11, 2025Updated 5 months ago
- Input files and binding free energy values from our benchmark with QuantumBind-RBFE☆16Apr 16, 2025Updated 11 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆238Mar 26, 2026Updated 2 weeks ago
- The Guest HOst Affinity Tool (GHOAT.py) is a fully automated tool for absolute binding free energy calculations on guest-host systems.☆22May 14, 2025Updated 11 months ago
- ☆25Feb 4, 2025Updated last year
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆221Jan 3, 2026Updated 3 months ago
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Aug 5, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Free Parametrization for Small Molecules☆52Feb 18, 2026Updated last month
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Aug 7, 2020Updated 5 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated last month
- Machine learning prediction of enzyme optimum pH☆53Apr 29, 2025Updated 11 months ago
- A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://pr…☆41Apr 2, 2026Updated last week
- A drop-in replacement for Rosetta Relax☆27Jan 30, 2026Updated 2 months ago
- ☆26Apr 22, 2024Updated last year
- User friendly and accurate binder design pipeline☆1,069Mar 13, 2026Updated last month
- ☆20Oct 4, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- mdml: Deep Learning for Molecular Simulations☆54May 17, 2025Updated 10 months ago
- code and source data for de novo design of Kemp elimination paper☆25Sep 18, 2025Updated 6 months ago
- Grid Generation☆11Mar 7, 2024Updated 2 years ago
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆31Mar 4, 2025Updated last year
- Code for running BinderFlow☆65Nov 21, 2025Updated 4 months ago
- It's a package for evaluation of predicted poses, right?☆76Mar 27, 2026Updated 2 weeks ago
- In silico directed evolution of peptide binders with AlphaFold☆265Jan 5, 2026Updated 3 months ago