Alternatives and similar repositories for proteindj

Users that are interested in proteindj are comparing it to the libraries listed below

• cytokineking / FreeBindCraft
  BindCraft modified to make PyRosetta use and installation optional: no license needed
  ☆103Updated last week
• samuelmurail / af_analysis
  Analysis of alphafold and colabfold results
  ☆32Updated this week
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆60Updated 2 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆54Updated 3 months ago
• cryoEM-CNIO / BinderFlow
  Code for running BinderFlow
  ☆49Updated 2 weeks ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆82Updated 4 months ago
• Jfeldman34 / AF3Complex
  ☆51Updated 5 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆74Updated last month
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆85Updated 6 months ago
• dina-lab3D / CombFold
  ☆88Updated last year
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆99Updated last week
• lcbc-epfl / metal-site-prediction
  ☆41Updated last year
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…
  ☆61Updated last month
• anton-bushuiev / ProteinTTT
  One protein is all you need
  ☆55Updated last week
• bene837 / af2seq
  ☆46Updated last year
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆162Updated 8 months ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆35Updated 7 years ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆37Updated 2 months ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆66Updated last year
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆61Updated 9 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year
• cddlab / alphafold3_tools
  Toolkit for alphafold3 input and output files
  ☆94Updated this week
• Kuhlman-Lab / evopro
  ☆92Updated last month
• minmarg / gtalign_alpha
  GTalign, high-performance protein structure alignment, superposition and search
  ☆52Updated 3 months ago
• jonfunk21 / ProteusAI
  ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…
  ☆66Updated 2 months ago
• regeneron-mpds / propermab
  ☆38Updated 8 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆49Updated last month
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆35Updated last year
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆110Updated last week
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆103Updated 2 months ago